Gene name: TDA11
Reference locus (S288C): YHR159W
Gene biotype: protein_coding
Description: Topoisomerase I damage affected protein 11; Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; potential Cdc28p substrate; null mutant is sensitive to expression of the top1-T722A allele
Top 10 interactors (score): LIN1 (0.747); KEL1 (0.745); REC104 (0.714); RAM1 (0.514); BNS1 (0.452)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:404640-406163:+ | gene-YHR159W_AKU4011 | rna-NM_001179290.1_AKU4011 | cds-NP_012029.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:111567-113081:- | gene-YHR159W_BG1 | rna-NM_001179290.1_BG1 | cds-NP_012029.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:411880-413403:+ | gene-YHR159W_Bruggeman | rna-NM_001179290.1_Bruggeman | cds-NP_012029.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:407303-408817:+ | gene-YHR159W_CAT1 | rna-NM_001179290.1_CAT1 | cds-NP_012029.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:404097-405620:+ | gene-YHR159W_CBS1585 | rna-NM_001179290.1_CBS1585 | cds-NP_012029.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:401559-403073:+ | gene-YHR159W_CBS436 | rna-NM_001179290.1_CBS436 | cds-NP_012029.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:404550-406073:+ | gene-YHR159W_CBS6412 | rna-NM_001179290.1_CBS6412 | cds-NP_012029.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:404977-406500:+ | gene-YHR159W_CBS6413 | rna-NM_001179290.1_CBS6413 | cds-NP_012029.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:410721-412235:+ | gene-YHR159W_CENPK1137D | rna-NM_001179290.1_CENPK1137D | cds-NP_012029.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:463191-464714:+ | gene-YHR159W_EthanolRed | rna-NM_001179290.1_EthanolRed | cds-NP_012029.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:405634-407157:+ | gene-YHR159W_FaliES1 | rna-NM_001179290.1_FaliES1 | cds-NP_012029.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:32684-34198:- | gene-YHR159W_JAY291 | rna-NM_001179290.1_JAY291 | cds-NP_012029.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:412960-414483:+ | gene-YHR159W_MUCL30387 | rna-NM_001179290.1_MUCL30387 | cds-NP_012029.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:412402-413925:+ | gene-YHR159W_MUCL30388 | rna-NM_001179290.1_MUCL30388 | cds-NP_012029.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:404008-405531:+ | gene-YHR159W_MUCL39482 | rna-NM_001179290.1_MUCL39482 | cds-NP_012029.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:410617-412140:+ | gene-YHR159W_MUCL42920 | rna-NM_001179290.1_MUCL42920 | cds-NP_012029.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:417431-418945:+ | gene-YHR159W_NCIM3186 | rna-NM_001179290.1_NCIM3186 | cds-NP_012029.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:406466-407989:+ | gene-YHR159W_NCYC1407 | rna-NM_001179290.1_NCYC1407 | cds-NP_012029.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:405619-407133:+ | gene-YHR159W_PE2H3 | rna-NM_001179290.1_PE2H3 | cds-NP_012029.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:413046-414560:+ | gene-YHR159W_PE2H4 | rna-NM_001179290.1_PE2H4 | cds-NP_012029.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:417549-419063:+ | gene-YHR159W_S288C | rna-NM_001179290.1_S288C | cds-NP_012029.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:32738-34252:- | gene-YHR159W_SA1 | rna-NM_001179290.1_SA1 | cds-NP_012029.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:406717-408240:+ | gene-YHR159W_ThermosaccDry | rna-NM_001179290.1_ThermosaccDry | cds-NP_012029.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:414541-416055:+ | gene-YHR159W_VR1 | rna-NM_001179290.1_VR1 | cds-NP_012029.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:396957-398480:+ | gene-YHR159W_ZTW1 | rna-NM_001179290.1_ZTW1 | cds-NP_012029.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:403086-404624:+ | gene-YHR159W_Sparadoxus | rna-NM_001179290.1_Sparadoxus | cds-NP_012029.1_Sparadoxus | 86.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |