Gene name: TCP1
Reference locus (S288C): YDR212W
Gene biotype: protein_coding
Description: Alpha subunit of chaperonin-containing T-complex; complex mediates protein folding in the cytosol; involved in actin cytoskeleton maintenance; overexpression in neurons suppresses formation of pathogenic conformations of huntingtin protein
Top 10 interactors (score): CCT8 (0.999); CCT6 (0.999); CCT4 (0.999); CCT7 (0.999); CCT5 (0.999); CCT2 (0.999); CCT3 (0.999); CDC55 (0.969); PLP2 (0.964); ACT1 (0.964); GIM5 (0.942); FAB1 (0.942); SUI2 (0.942); HSP60 (0.94); GIM3 (0.929); CAM1 (0.926); SUB2 (0.923); RPL3 (0.921); ILS1 (0.918); TEF4 (0.918)
Homologues (species, bitscore): TCP1 (Homo sapiens, 699.1); Tcp1 (Mus musculus, 686.4); tcp1 (Danio rerio, 698.0); cct7 (Xenopus tropicalis, 288.9); T-cp1 (Drosophila melanogaster, 692.2); cct-1 (Caenorhabditis elegans, 672.5); TCP-1 (Arabidopsis thaliana, 688.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:843877-845556:+ | gene-YDR212W_AKU4011 | rna-NM_001180520.1_AKU4011 | cds-NP_010498.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:280197-281876:- | gene-YDR212W_BG1 | rna-NM_001180520.1_BG1 | cds-NP_010498.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:876282-877961:+ | gene-YDR212W_Bruggeman | rna-NM_001180520.1_Bruggeman | cds-NP_010498.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:863548-865227:+ | gene-YDR212W_CAT1 | rna-NM_001180520.1_CAT1 | cds-NP_010498.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:834230-835909:+ | gene-YDR212W_CBS1585 | rna-NM_001180520.1_CBS1585 | cds-NP_010498.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:863297-864976:+ | gene-YDR212W_CBS436 | rna-NM_001180520.1_CBS436 | cds-NP_010498.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:831042-832721:+ | gene-YDR212W_CBS6412 | rna-NM_001180520.1_CBS6412 | cds-NP_010498.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:861587-863266:+ | gene-YDR212W_CBS6413 | rna-NM_001180520.1_CBS6413 | cds-NP_010498.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:886031-887710:+ | gene-YDR212W_CENPK1137D | rna-NM_001180520.1_CENPK1137D | cds-NP_010498.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:844617-846296:+ | gene-YDR212W_EthanolRed | rna-NM_001180520.1_EthanolRed | cds-NP_010498.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:852823-854502:+ | gene-YDR212W_FaliES1 | rna-NM_001180520.1_FaliES1 | cds-NP_010498.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000058.1:2754-4433:+ | gene-YDR212W_JAY291 | rna-NM_001180520.1_JAY291 | cds-NP_010498.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:861933-863612:+ | gene-YDR212W_MUCL30387 | rna-NM_001180520.1_MUCL30387 | cds-NP_010498.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:850187-851866:+ | gene-YDR212W_MUCL30388 | rna-NM_001180520.1_MUCL30388 | cds-NP_010498.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:835682-837361:+ | gene-YDR212W_MUCL39482 | rna-NM_001180520.1_MUCL39482 | cds-NP_010498.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:774982-776661:+ | gene-YDR212W_MUCL42920 | rna-NM_001180520.1_MUCL42920 | cds-NP_010498.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:887155-888834:+ | gene-YDR212W_NCIM3186 | rna-NM_001180520.1_NCIM3186 | cds-NP_010498.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:839368-841047:+ | gene-YDR212W_NCYC1407 | rna-NM_001180520.1_NCYC1407 | cds-NP_010498.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:855564-857243:+ | gene-YDR212W_PE2H3 | rna-NM_001180520.1_PE2H3 | cds-NP_010498.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:860845-862524:+ | gene-YDR212W_PE2H4 | rna-NM_001180520.1_PE2H4 | cds-NP_010498.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:887232-888911:+ | gene-YDR212W_S288C | rna-NM_001180520.1_S288C | cds-NP_010498.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:93330-95009:+ | gene-YDR212W_SA1 | rna-NM_001180520.1_SA1 | cds-NP_010498.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:850984-852663:+ | gene-YDR212W_ThermosaccDry | rna-NM_001180520.1_ThermosaccDry | cds-NP_010498.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:866210-867889:+ | gene-YDR212W_VR1 | rna-NM_001180520.1_VR1 | cds-NP_010498.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:113701-115380:+ | gene-YDR212W_ZTW1 | rna-NM_001180520.1_ZTW1 | cds-NP_010498.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:856109-857788:+ | gene-YDR212W_Sparadoxus | rna-NM_001180520.1_Sparadoxus | cds-NP_010498.1_Sparadoxus | 93.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |