Gene name: TCO89
Reference locus (S288C): YPL180W
Gene biotype: protein_coding
Description: Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p); regulates global H3K56ac; TORC1 complex regulates growth in response to nutrient availability; cooperates with Ssd1p in the maintenance of cellular integrity; deletion strains are hypersensitive to rapamycin
Top 10 interactors (score): KOG1 (0.999); LST8 (0.998); TOR1 (0.997); TOR2 (0.99); BIT61 (0.96); GTR1 (0.956); AVO1 (0.933); AVO2 (0.931); TSC11 (0.926); PIB2 (0.909); GTR2 (0.865); MEH1 (0.847); SLM4 (0.813); BIT2 (0.809); FPR1 (0.782); SIT4 (0.776); SCH9 (0.772); TAP42 (0.75); NPR1 (0.747); EGO2 (0.744)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:183251-185650:+ | gene-YPL180W_AKU4011 | rna-NM_001183994.1_AKU4011 | cds-NP_015145.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:388863-391262:+ | gene-YPL180W_BG1 | rna-NM_001183994.1_BG1 | cds-NP_015145.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:209097-211496:+ | gene-YPL180W_Bruggeman | rna-NM_001183994.1_Bruggeman | cds-NP_015145.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:205440-207839:+ | gene-YPL180W_CAT1 | rna-NM_001183994.1_CAT1 | cds-NP_015145.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:187317-189716:+ | gene-YPL180W_CBS1585 | rna-NM_001183994.1_CBS1585 | cds-NP_015145.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:201973-204372:+ | gene-YPL180W_CBS436 | rna-NM_001183994.1_CBS436 | cds-NP_015145.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:191989-194388:+ | gene-YPL180W_CBS6412 | rna-NM_001183994.1_CBS6412 | cds-NP_015145.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:183469-185868:+ | gene-YPL180W_CBS6413 | rna-NM_001183994.1_CBS6413 | cds-NP_015145.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:205130-207529:+ | gene-YPL180W_CENPK1137D | rna-NM_001183994.1_CENPK1137D | cds-NP_015145.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:181993-184392:+ | gene-YPL180W_EthanolRed | rna-NM_001183994.1_EthanolRed | cds-NP_015145.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:189585-191984:+ | gene-YPL180W_FaliES1 | rna-NM_001183994.1_FaliES1 | cds-NP_015145.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:173917-176316:- | gene-YPL180W_JAY291 | rna-NM_001183994.1_JAY291 | cds-NP_015145.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:200479-202878:+ | gene-YPL180W_MUCL30387 | rna-NM_001183994.1_MUCL30387 | cds-NP_015145.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:198498-200897:+ | gene-YPL180W_MUCL30388 | rna-NM_001183994.1_MUCL30388 | cds-NP_015145.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:180646-183045:+ | gene-YPL180W_MUCL39482 | rna-NM_001183994.1_MUCL39482 | cds-NP_015145.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:237326-239725:+ | gene-YPL180W_MUCL42920 | rna-NM_001183994.1_MUCL42920 | cds-NP_015145.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:205231-207630:+ | gene-YPL180W_NCIM3186 | rna-NM_001183994.1_NCIM3186 | cds-NP_015145.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:187100-189499:+ | gene-YPL180W_NCYC1407 | rna-NM_001183994.1_NCYC1407 | cds-NP_015145.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:194540-196939:+ | gene-YPL180W_PE2H3 | rna-NM_001183994.1_PE2H3 | cds-NP_015145.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:194183-196582:+ | gene-YPL180W_PE2H4 | rna-NM_001183994.1_PE2H4 | cds-NP_015145.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:205248-207647:+ | gene-YPL180W_S288C | rna-NM_001183994.1_S288C | cds-NP_015145.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:165699-168098:- | gene-YPL180W_SA1 | rna-NM_001183994.1_SA1 | cds-NP_015145.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:189383-191782:+ | gene-YPL180W_ThermosaccDry | rna-NM_001183994.1_ThermosaccDry | cds-NP_015145.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:204313-206712:+ | gene-YPL180W_VR1 | rna-NM_001183994.1_VR1 | cds-NP_015145.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:188712-191111:+ | gene-YPL180W_ZTW1 | rna-NM_001183994.1_ZTW1 | cds-NP_015145.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:190329-192731:+ | gene-YPL180W_Sparadoxus | rna-NM_001183994.1_Sparadoxus | cds-NP_015145.1_Sparadoxus | 87.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |