Gene name: TCA17
Reference locus (S288C): YEL048C
Gene biotype: protein_coding
Description: TRAPP-associated protein TCA17; Component of transport protein particle (TRAPP) complex II; TRAPPII is a multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating intra-Golgi and endosome-Golgi traffic; promotes association of TRAPPII-specific subunits with the TRAPP core complex; sedlin related; human Sedlin mutations cause SEDT, a skeletal disorder
Top 10 interactors (score): TRS33 (0.997); TRS65 (0.997); TRS130 (0.997); BET3 (0.997); TRS31 (0.997); TRS120 (0.997); BET5 (0.996); TRS20 (0.994); TRS23 (0.993); TRS85 (0.988); YPT1 (0.714); YPT31 (0.712); YPT32 (0.696); DSL1 (0.694); YPT6 (0.569); VPS53 (0.492); COG6 (0.482); SEC21 (0.453); COG8 (0.452); VPS52 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:58773-59231:- | gene-YEL048C_AKU4011 | rna-NM_001178863.1_AKU4011 | cds-NP_010866.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000075.1:21297-21755:+ | gene-YEL048C_BG1 | rna-NM_001178863.1_BG1 | cds-NP_010866.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:62290-62748:- | gene-YEL048C_Bruggeman | rna-NM_001178863.1_Bruggeman | cds-NP_010866.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:60711-61169:- | gene-YEL048C_CAT1 | rna-NM_001178863.1_CAT1 | cds-NP_010866.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:58721-59179:- | gene-YEL048C_CBS1585 | rna-NM_001178863.1_CBS1585 | cds-NP_010866.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:60349-60807:- | gene-YEL048C_CBS436 | rna-NM_001178863.1_CBS436 | cds-NP_010866.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:58970-59428:- | gene-YEL048C_CBS6412 | rna-NM_001178863.1_CBS6412 | cds-NP_010866.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:63614-64072:- | gene-YEL048C_CBS6413 | rna-NM_001178863.1_CBS6413 | cds-NP_010866.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:62564-63022:- | gene-YEL048C_CENPK1137D | rna-NM_001178863.1_CENPK1137D | cds-NP_010866.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:58526-58984:- | gene-YEL048C_EthanolRed | rna-NM_001178863.1_EthanolRed | cds-NP_010866.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:58789-59247:- | gene-YEL048C_FaliES1 | rna-NM_001178863.1_FaliES1 | cds-NP_010866.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000022.1:20565-21023:+ | gene-YEL048C_JAY291 | rna-NM_001178863.1_JAY291 | cds-NP_010866.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:62974-63432:- | gene-YEL048C_MUCL30387 | rna-NM_001178863.1_MUCL30387 | cds-NP_010866.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:58835-59293:- | gene-YEL048C_MUCL30388 | rna-NM_001178863.1_MUCL30388 | cds-NP_010866.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:58088-58546:- | gene-YEL048C_MUCL39482 | rna-NM_001178863.1_MUCL39482 | cds-NP_010866.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:62721-63179:- | gene-YEL048C_MUCL42920 | rna-NM_001178863.1_MUCL42920 | cds-NP_010866.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:64708-65166:- | gene-YEL048C_NCIM3186 | rna-NM_001178863.1_NCIM3186 | cds-NP_010866.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:63182-63640:- | gene-YEL048C_NCYC1407 | rna-NM_001178863.1_NCYC1407 | cds-NP_010866.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:67203-67661:- | gene-YEL048C_PE2H3 | rna-NM_001178863.1_PE2H3 | cds-NP_010866.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:63118-63576:- | gene-YEL048C_PE2H4 | rna-NM_001178863.1_PE2H4 | cds-NP_010866.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:64709-65167:- | gene-YEL048C_S288C | rna-NM_001178863.1_S288C | cds-NP_010866.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000053.1:21454-21912:+ | gene-YEL048C_SA1 | rna-NM_001178863.1_SA1 | cds-NP_010866.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:59189-59647:- | gene-YEL048C_ThermosaccDry | rna-NM_001178863.1_ThermosaccDry | cds-NP_010866.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:58406-58864:- | gene-YEL048C_VR1 | rna-NM_001178863.1_VR1 | cds-NP_010866.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:58121-58579:- | gene-YEL048C_ZTW1 | rna-NM_001178863.1_ZTW1 | cds-NP_010866.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:60788-61246:- | gene-YEL048C_Sparadoxus | rna-NM_001178863.1_Sparadoxus | cds-NP_010866.1_Sparadoxus | 89.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |