Gene name: TAP42
Reference locus (S288C): YMR028W
Gene biotype: protein_coding
Description: Type 2A phosphatase-associated protein 42; Essential protein involved in the TOR signaling pathway; physically associates with the protein phosphatase 2A and the SIT4 protein phosphatase catalytic subunits; Belongs to the IGBP1/TAP42 family
Top 10 interactors (score): PPH3 (0.999); TIP41 (0.999); PPH22 (0.999); SIT4 (0.999); PPH21 (0.999); PPG1 (0.998); TOR1 (0.994); RRD1 (0.992); KOG1 (0.992); TOR2 (0.991); LST8 (0.987); RRD2 (0.986); YNL217W (0.981); TPD3 (0.975); SCH9 (0.959); CDC55 (0.912); GCN2 (0.907); GLN3 (0.899); RTS1 (0.893); CCT7 (0.886)
Homologues (species, bitscore): IGBP1 (Homo sapiens, 84.0); Igbp1 (Mus musculus, 73.6); igbp1 (Danio rerio, 84.7); igbp1 (Xenopus tropicalis, 65.5); Tap42 (Drosophila melanogaster, 60.8); ppfr-4 (Caenorhabditis elegans, 74.7); TAP46 (Arabidopsis thaliana, 56.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:377079-378179:+ | gene-YMR028W_AKU4011 | rna-NM_001182524.1_AKU4011 | cds-NP_013741.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:164674-165774:- | gene-YMR028W_BG1 | rna-NM_001182524.1_BG1 | cds-NP_013741.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:317020-318120:+ | gene-YMR028W_Bruggeman | rna-NM_001182524.1_Bruggeman | cds-NP_013741.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:319532-320632:+ | gene-YMR028W_CAT1 | rna-NM_001182524.1_CAT1 | cds-NP_013741.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:310018-311118:+ | gene-YMR028W_CBS1585 | rna-NM_001182524.1_CBS1585 | cds-NP_013741.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:315571-316671:+ | gene-YMR028W_CBS436 | rna-NM_001182524.1_CBS436 | cds-NP_013741.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:423422-424522:+ | gene-YMR028W_CBS6412 | rna-NM_001182524.1_CBS6412 | cds-NP_013741.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:309276-310376:+ | gene-YMR028W_CBS6413 | rna-NM_001182524.1_CBS6413 | cds-NP_013741.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:322211-323311:+ | gene-YMR028W_CENPK1137D | rna-NM_001182524.1_CENPK1137D | cds-NP_013741.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:309851-310951:+ | gene-YMR028W_EthanolRed | rna-NM_001182524.1_EthanolRed | cds-NP_013741.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:313034-314134:+ | gene-YMR028W_FaliES1 | rna-NM_001182524.1_FaliES1 | cds-NP_013741.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:122805-123905:- | gene-YMR028W_JAY291 | rna-NM_001182524.1_JAY291 | cds-NP_013741.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:314979-316079:+ | gene-YMR028W_MUCL30387 | rna-NM_001182524.1_MUCL30387 | cds-NP_013741.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:319403-320503:+ | gene-YMR028W_MUCL30388 | rna-NM_001182524.1_MUCL30388 | cds-NP_013741.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:310303-311403:+ | gene-YMR028W_MUCL39482 | rna-NM_001182524.1_MUCL39482 | cds-NP_013741.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:316121-317221:+ | gene-YMR028W_MUCL42920 | rna-NM_001182524.1_MUCL42920 | cds-NP_013741.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:327436-328536:+ | gene-YMR028W_NCIM3186 | rna-NM_001182524.1_NCIM3186 | cds-NP_013741.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:310220-311320:+ | gene-YMR028W_NCYC1407 | rna-NM_001182524.1_NCYC1407 | cds-NP_013741.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:316167-317267:+ | gene-YMR028W_PE2H3 | rna-NM_001182524.1_PE2H3 | cds-NP_013741.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:322262-323362:+ | gene-YMR028W_PE2H4 | rna-NM_001182524.1_PE2H4 | cds-NP_013741.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:327482-328582:+ | gene-YMR028W_S288C | rna-NM_001182524.1_S288C | cds-NP_013741.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:209682-210782:- | gene-YMR028W_SA1 | rna-NM_001182524.1_SA1 | cds-NP_013741.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:310103-311203:+ | gene-YMR028W_ThermosaccDry | rna-NM_001182524.1_ThermosaccDry | cds-NP_013741.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:314803-315903:+ | gene-YMR028W_VR1 | rna-NM_001182524.1_VR1 | cds-NP_013741.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:289118-290218:+ | gene-YMR028W_ZTW1 | rna-NM_001182524.1_ZTW1 | cds-NP_013741.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:323035-324135:+ | gene-YMR028W_Sparadoxus | rna-NM_001182524.1_Sparadoxus | cds-NP_013741.1_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |