Gene name: TAF9
Reference locus (S288C): YMR236W
Gene biotype: protein_coding
Description: Transcription initiation factor tfiid subunit 9b; Subunit (17 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H3
Top 10 interactors (score): TAF4 (0.999); SPT3 (0.999); TAF10 (0.999); TAF13 (0.999); TAF1 (0.999); HFI1 (0.999); SPT7 (0.999); NGG1 (0.999); TAF7 (0.999); ADA2 (0.999); TAF11 (0.999); TAF5 (0.999); TAF6 (0.999); TAF2 (0.999); SPT15 (0.999); TRA1 (0.999); TAF12 (0.999); SGF73 (0.999); GCN5 (0.999); TAF8 (0.999)
Homologues (species, bitscore): AK6 (Homo sapiens, 93.6); Taf9 (Mus musculus, 92.4); taf9 (Danio rerio, 90.5); taf9b (Xenopus tropicalis, 92.4); e(y)1 (Drosophila melanogaster, 75.1); TAFII21 (Arabidopsis thaliana, 92.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:782879-783352:+ | gene-YMR236W_AKU4011 | rna-NM_001182743.1_AKU4011 | cds-NP_013963.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:171240-171713:- | gene-YMR236W_BG1 | rna-NM_001182743.1_BG1 | cds-NP_013963.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:727104-727577:+ | gene-YMR236W_Bruggeman | rna-NM_001182743.1_Bruggeman | cds-NP_013963.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:730997-731470:+ | gene-YMR236W_CAT1 | rna-NM_001182743.1_CAT1 | cds-NP_013963.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:715138-715611:+ | gene-YMR236W_CBS1585 | rna-NM_001182743.1_CBS1585 | cds-NP_013963.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:719406-719879:+ | gene-YMR236W_CBS436 | rna-NM_001182743.1_CBS436 | cds-NP_013963.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:826700-827173:+ | gene-YMR236W_CBS6412 | rna-NM_001182743.1_CBS6412 | cds-NP_013963.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:714291-714764:+ | gene-YMR236W_CBS6413 | rna-NM_001182743.1_CBS6413 | cds-NP_013963.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:737714-738187:+ | gene-YMR236W_CENPK1137D | rna-NM_001182743.1_CENPK1137D | cds-NP_013963.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:775344-775817:+ | gene-YMR236W_EthanolRed | rna-NM_001182743.1_EthanolRed | cds-NP_013963.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:720996-721469:+ | gene-YMR236W_FaliES1 | rna-NM_001182743.1_FaliES1 | cds-NP_013963.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:64550-65023:- | gene-YMR236W_JAY291 | rna-NM_001182743.1_JAY291 | cds-NP_013963.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:720888-721361:+ | gene-YMR236W_MUCL30387 | rna-NM_001182743.1_MUCL30387 | cds-NP_013963.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:728115-728588:+ | gene-YMR236W_MUCL30388 | rna-NM_001182743.1_MUCL30388 | cds-NP_013963.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:716208-716681:+ | gene-YMR236W_MUCL39482 | rna-NM_001182743.1_MUCL39482 | cds-NP_013963.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:723552-724025:+ | gene-YMR236W_MUCL42920 | rna-NM_001182743.1_MUCL42920 | cds-NP_013963.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:742925-743398:+ | gene-YMR236W_NCIM3186 | rna-NM_001182743.1_NCIM3186 | cds-NP_013963.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:715865-716338:+ | gene-YMR236W_NCYC1407 | rna-NM_001182743.1_NCYC1407 | cds-NP_013963.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:725744-726217:+ | gene-YMR236W_PE2H3 | rna-NM_001182743.1_PE2H3 | cds-NP_013963.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:726762-727235:+ | gene-YMR236W_PE2H4 | rna-NM_001182743.1_PE2H4 | cds-NP_013963.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:742971-743444:+ | gene-YMR236W_S288C | rna-NM_001182743.1_S288C | cds-NP_013963.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:64664-65137:- | gene-YMR236W_SA1 | rna-NM_001182743.1_SA1 | cds-NP_013963.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:717167-717640:+ | gene-YMR236W_ThermosaccDry | rna-NM_001182743.1_ThermosaccDry | cds-NP_013963.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:730279-730752:+ | gene-YMR236W_VR1 | rna-NM_001182743.1_VR1 | cds-NP_013963.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:132870-133343:+ | gene-YMR236W_ZTW1 | rna-NM_001182743.1_ZTW1 | cds-NP_013963.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:735053-735526:+ | gene-YMR236W_Sparadoxus | rna-NM_001182743.1_Sparadoxus | cds-NP_013963.1_Sparadoxus | 87.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |