Gene name: TAF7
Reference locus (S288C): YMR227C
Gene biotype: protein_coding
Description: TFIID subunit (67 kDa); involved in RNA polymerase II transcription initiation
Top 10 interactors (score): TAF8 (0.999); TAF12 (0.999); SPT15 (0.999); TAF3 (0.999); TAF14 (0.999); TAF2 (0.999); TAF9 (0.999); TAF4 (0.999); TAF11 (0.999); TAF5 (0.999); TAF6 (0.999); TAF1 (0.999); TAF10 (0.999); TAF13 (0.999); BDF1 (0.968); SUA7 (0.959); BDF2 (0.95); TFG1 (0.905); SPT6 (0.876); TFA2 (0.859)
Homologues (species, bitscore): TAF7L (Homo sapiens, 68.9); Taf7l (Mus musculus, 80.5); taf7 (Danio rerio, 72.0); taf7 (Xenopus tropicalis, 56.2); Taf7 (Drosophila melanogaster, 68.6); taf-7.1 (Caenorhabditis elegans, 81.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:762519-764291:- | gene-YMR227C_AKU4011 | rna-NM_001182734.1_AKU4011 | cds-NP_013954.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:190299-192089:+ | gene-YMR227C_BG1 | rna-NM_001182734.1_BG1 | cds-NP_013954.1_BG1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:706746-708518:- | gene-YMR227C_Bruggeman | rna-NM_001182734.1_Bruggeman | cds-NP_013954.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:710621-712411:- | gene-YMR227C_CAT1 | rna-NM_001182734.1_CAT1 | cds-NP_013954.1_CAT1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:694779-696551:- | gene-YMR227C_CBS1585 | rna-NM_001182734.1_CBS1585 | cds-NP_013954.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:699048-700820:- | gene-YMR227C_CBS436 | rna-NM_001182734.1_CBS436 | cds-NP_013954.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:806341-808113:- | gene-YMR227C_CBS6412 | rna-NM_001182734.1_CBS6412 | cds-NP_013954.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:693931-695703:- | gene-YMR227C_CBS6413 | rna-NM_001182734.1_CBS6413 | cds-NP_013954.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:717356-719128:- | gene-YMR227C_CENPK1137D | rna-NM_001182734.1_CENPK1137D | cds-NP_013954.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:754985-756757:- | gene-YMR227C_EthanolRed | rna-NM_001182734.1_EthanolRed | cds-NP_013954.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:700637-702409:- | gene-YMR227C_FaliES1 | rna-NM_001182734.1_FaliES1 | cds-NP_013954.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:83608-85398:+ | gene-YMR227C_JAY291 | rna-NM_001182734.1_JAY291 | cds-NP_013954.1_JAY291 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:700529-702301:- | gene-YMR227C_MUCL30387 | rna-NM_001182734.1_MUCL30387 | cds-NP_013954.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:707757-709529:- | gene-YMR227C_MUCL30388 | rna-NM_001182734.1_MUCL30388 | cds-NP_013954.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:695849-697621:- | gene-YMR227C_MUCL39482 | rna-NM_001182734.1_MUCL39482 | cds-NP_013954.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:703193-704965:- | gene-YMR227C_MUCL42920 | rna-NM_001182734.1_MUCL42920 | cds-NP_013954.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:722567-724339:- | gene-YMR227C_NCIM3186 | rna-NM_001182734.1_NCIM3186 | cds-NP_013954.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:695506-697278:- | gene-YMR227C_NCYC1407 | rna-NM_001182734.1_NCYC1407 | cds-NP_013954.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:705368-707158:- | gene-YMR227C_PE2H3 | rna-NM_001182734.1_PE2H3 | cds-NP_013954.1_PE2H3 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:706386-708176:- | gene-YMR227C_PE2H4 | rna-NM_001182734.1_PE2H4 | cds-NP_013954.1_PE2H4 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:722613-724385:- | gene-YMR227C_S288C | rna-NM_001182734.1_S288C | cds-NP_013954.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:83723-85513:+ | gene-YMR227C_SA1 | rna-NM_001182734.1_SA1 | cds-NP_013954.1_SA1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:696808-698580:- | gene-YMR227C_ThermosaccDry | rna-NM_001182734.1_ThermosaccDry | cds-NP_013954.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:709891-711693:- | gene-YMR227C_VR1 | rna-NM_001182734.1_VR1 | cds-NP_013954.1_VR1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:112513-114285:- | gene-YMR227C_ZTW1 | rna-NM_001182734.1_ZTW1 | cds-NP_013954.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:714766-716556:- | gene-YMR227C_Sparadoxus | rna-NM_001182734.1_Sparadoxus | cds-NP_013954.1_Sparadoxus | 87.3 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |