Gene name: TAF6
Reference locus (S288C): YGL112C
Gene biotype: protein_coding
Description: Subunit (60 kDa) of TFIID and SAGA complexes; involved in transcription initiation of RNA polymerase II and in chromatin modification, similar to histone H4; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): TAF9 (0.999); TAF10 (0.999); TAF1 (0.999); NGG1 (0.999); HFI1 (0.999); SPT7 (0.999); SPT15 (0.999); SPT20 (0.999); SGF73 (0.999); TAF12 (0.999); TAF8 (0.999); GCN5 (0.999); SPT8 (0.999); TAF2 (0.999); SPT3 (0.999); SGF29 (0.999); TAF13 (0.999); TAF7 (0.999); TAF4 (0.999); TAF11 (0.999)
Homologues (species, bitscore): TAF6 (Homo sapiens, 213.0); Taf6 (Mus musculus, 213.4); taf6 (Danio rerio, 220.3); taf6 (Xenopus tropicalis, 205.3); Taf6 (Drosophila melanogaster, 199.5); taf-6.1 (Caenorhabditis elegans, 77.8); TAFII59 (Arabidopsis thaliana, 257.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:301505-303055:- | gene-YGL112C_AKU4011 | rna-NM_001180977.1_AKU4011 | cds-NP_011403.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:102691-104241:+ | gene-YGL112C_BG1 | rna-NM_001180977.1_BG1 | cds-NP_011403.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:303663-305213:- | gene-YGL112C_Bruggeman | rna-NM_001180977.1_Bruggeman | cds-NP_011403.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:299185-300735:- | gene-YGL112C_CAT1 | rna-NM_001180977.1_CAT1 | cds-NP_011403.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:304830-306380:- | gene-YGL112C_CBS1585 | rna-NM_001180977.1_CBS1585 | cds-NP_011403.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:299134-300684:- | gene-YGL112C_CBS436 | rna-NM_001180977.1_CBS436 | cds-NP_011403.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:289523-291073:- | gene-YGL112C_CBS6412 | rna-NM_001180977.1_CBS6412 | cds-NP_011403.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:299128-300678:- | gene-YGL112C_CBS6413 | rna-NM_001180977.1_CBS6413 | cds-NP_011403.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:298365-299915:- | gene-YGL112C_CENPK1137D | rna-NM_001180977.1_CENPK1137D | cds-NP_011403.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:290578-292128:- | gene-YGL112C_EthanolRed | rna-NM_001180977.1_EthanolRed | cds-NP_011403.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:293133-294683:- | gene-YGL112C_FaliES1 | rna-NM_001180977.1_FaliES1 | cds-NP_011403.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000046.1:7463-9013:+ | gene-YGL112C_JAY291 | rna-NM_001180977.1_JAY291 | cds-NP_011403.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:300633-302183:- | gene-YGL112C_MUCL30387 | rna-NM_001180977.1_MUCL30387 | cds-NP_011403.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:303725-305275:- | gene-YGL112C_MUCL30388 | rna-NM_001180977.1_MUCL30388 | cds-NP_011403.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:301343-302893:- | gene-YGL112C_MUCL39482 | rna-NM_001180977.1_MUCL39482 | cds-NP_011403.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:304623-306173:- | gene-YGL112C_MUCL42920 | rna-NM_001180977.1_MUCL42920 | cds-NP_011403.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:298178-299728:- | gene-YGL112C_NCIM3186 | rna-NM_001180977.1_NCIM3186 | cds-NP_011403.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:292833-294383:- | gene-YGL112C_NCYC1407 | rna-NM_001180977.1_NCYC1407 | cds-NP_011403.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:294218-295768:- | gene-YGL112C_PE2H3 | rna-NM_001180977.1_PE2H3 | cds-NP_011403.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:299216-300766:- | gene-YGL112C_PE2H4 | rna-NM_001180977.1_PE2H4 | cds-NP_011403.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:298178-299728:- | gene-YGL112C_S288C | rna-NM_001180977.1_S288C | cds-NP_011403.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:42966-44516:- | gene-YGL112C_SA1 | rna-NM_001180977.1_SA1 | cds-NP_011403.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:293345-294895:- | gene-YGL112C_ThermosaccDry | rna-NM_001180977.1_ThermosaccDry | cds-NP_011403.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:402941-404491:- | gene-YGL112C_VR1 | rna-NM_001180977.1_VR1 | cds-NP_011403.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:290741-292291:- | gene-YGL112C_ZTW1 | rna-NM_001180977.1_ZTW1 | cds-NP_011403.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:297161-298711:- | gene-YGL112C_Sparadoxus | rna-NM_001180977.1_Sparadoxus | cds-NP_011403.1_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |