Gene name: TAF5
Reference locus (S288C): YBR198C
Gene biotype: protein_coding
Description: Transcription initiation factor tfiid subunit 5; Subunit (90 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification
Top 10 interactors (score): TAF4 (0.999); TAF1 (0.999); TAF10 (0.999); NGG1 (0.999); TAF6 (0.999); TAF9 (0.999); TAF11 (0.999); TAF2 (0.999); SPT8 (0.999); TAF7 (0.999); TAF8 (0.999); SPT15 (0.999); SPT20 (0.999); SGF73 (0.999); TAF12 (0.999); ADA2 (0.999); TAF13 (0.999); SGF29 (0.999); SPT3 (0.999); GCN5 (0.999)
Homologues (species, bitscore): TAF5 (Homo sapiens, 390.6); Taf5 (Mus musculus, 392.1); taf5 (Danio rerio, 399.1); taf5 (Xenopus tropicalis, 308.5); Taf5 (Drosophila melanogaster, 318.5); taf-5 (Caenorhabditis elegans, 216.1); TAF5 (Arabidopsis thaliana, 388.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:599497-601893:- | gene-YBR198C_AKU4011 | rna-NM_001178546.1_AKU4011 | cds-NP_009757.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:589497-591893:- | gene-YBR198C_BG1 | rna-NM_001178546.1_BG1 | cds-NP_009757.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:405352-407748:- | gene-YBR198C_Bruggeman | rna-NM_001178546.1_Bruggeman | cds-NP_009757.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:604758-607154:- | gene-YBR198C_CAT1 | rna-NM_001178546.1_CAT1 | cds-NP_009757.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:591278-593674:- | gene-YBR198C_CBS1585 | rna-NM_001178546.1_CBS1585 | cds-NP_009757.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:598823-601219:- | gene-YBR198C_CBS436 | rna-NM_001178546.1_CBS436 | cds-NP_009757.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:687887-690283:- | gene-YBR198C_CBS6412 | rna-NM_001178546.1_CBS6412 | cds-NP_009757.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:597084-599480:- | gene-YBR198C_CBS6413 | rna-NM_001178546.1_CBS6413 | cds-NP_009757.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:609901-612297:- | gene-YBR198C_CENPK1137D | rna-NM_001178546.1_CENPK1137D | cds-NP_009757.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:724653-727049:- | gene-YBR198C_EthanolRed | rna-NM_001178546.1_EthanolRed | cds-NP_009757.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:615564-617960:- | gene-YBR198C_FaliES1 | rna-NM_001178546.1_FaliES1 | cds-NP_009757.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000023.1:9165-11561:- | gene-YBR198C_JAY291 | rna-NM_001178546.1_JAY291 | cds-NP_009757.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:604031-606427:- | gene-YBR198C_MUCL30387 | rna-NM_001178546.1_MUCL30387 | cds-NP_009757.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:621108-623504:- | gene-YBR198C_MUCL30388 | rna-NM_001178546.1_MUCL30388 | cds-NP_009757.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:589651-592047:- | gene-YBR198C_MUCL39482 | rna-NM_001178546.1_MUCL39482 | cds-NP_009757.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:599072-601468:- | gene-YBR198C_MUCL42920 | rna-NM_001178546.1_MUCL42920 | cds-NP_009757.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:615924-618320:- | gene-YBR198C_NCIM3186 | rna-NM_001178546.1_NCIM3186 | cds-NP_009757.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:591759-594155:- | gene-YBR198C_NCYC1407 | rna-NM_001178546.1_NCYC1407 | cds-NP_009757.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:604369-606765:- | gene-YBR198C_PE2H3 | rna-NM_001178546.1_PE2H3 | cds-NP_009757.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:602045-604441:- | gene-YBR198C_PE2H4 | rna-NM_001178546.1_PE2H4 | cds-NP_009757.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:616127-618523:- | gene-YBR198C_S288C | rna-NM_001178546.1_S288C | cds-NP_009757.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000080.1:23819-26215:- | gene-YBR198C_SA1 | rna-NM_001178546.1_SA1 | cds-NP_009757.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:614574-616970:- | gene-YBR198C_ThermosaccDry | rna-NM_001178546.1_ThermosaccDry | cds-NP_009757.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:595745-598141:- | gene-YBR198C_VR1 | rna-NM_001178546.1_VR1 | cds-NP_009757.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:589190-591586:- | gene-YBR198C_ZTW1 | rna-NM_001178546.1_ZTW1 | cds-NP_009757.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:631830-634229:- | gene-YBR198C_Sparadoxus | rna-NM_001178546.1_Sparadoxus | cds-NP_009757.1_Sparadoxus | 91.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |