Gene name: TAF4
Reference locus (S288C): YMR005W
Gene biotype: protein_coding
Description: TFIID subunit (48 kDa); involved in RNA polymerase II transcription initiation; potential Cdc28p substrate
Top 10 interactors (score): TAF9 (0.999); TAF11 (0.999); TAF6 (0.999); TAF5 (0.999); TAF7 (0.999); TAF1 (0.999); TAF13 (0.999); TAF10 (0.999); TAF8 (0.999); TAF12 (0.999); SPT15 (0.999); TAF3 (0.999); TAF2 (0.999); TAF14 (0.988); SUA7 (0.964); TOA2 (0.926); RPB11 (0.922); TFA2 (0.879); KIN28 (0.867); TOA1 (0.83)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:325661-326827:+ | gene-YMR005W_AKU4011 | rna-NM_001182501.1_AKU4011 | cds-NP_013718.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:216037-217203:- | gene-YMR005W_BG1 | rna-NM_001182501.1_BG1 | cds-NP_013718.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:265607-266773:+ | gene-YMR005W_Bruggeman | rna-NM_001182501.1_Bruggeman | cds-NP_013718.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:268103-269269:+ | gene-YMR005W_CAT1 | rna-NM_001182501.1_CAT1 | cds-NP_013718.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:258602-259768:+ | gene-YMR005W_CBS1585 | rna-NM_001182501.1_CBS1585 | cds-NP_013718.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:264146-265312:+ | gene-YMR005W_CBS436 | rna-NM_001182501.1_CBS436 | cds-NP_013718.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:372006-373172:+ | gene-YMR005W_CBS6412 | rna-NM_001182501.1_CBS6412 | cds-NP_013718.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:257858-259024:+ | gene-YMR005W_CBS6413 | rna-NM_001182501.1_CBS6413 | cds-NP_013718.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:270776-271941:+ | gene-YMR005W_CENPK1137D | rna-NM_001182501.1_CENPK1137D | cds-NP_013718.1_CENPK1137D | 99.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:258409-259575:+ | gene-YMR005W_EthanolRed | rna-NM_001182501.1_EthanolRed | cds-NP_013718.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:261595-262761:+ | gene-YMR005W_FaliES1 | rna-NM_001182501.1_FaliES1 | cds-NP_013718.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:174170-175336:- | gene-YMR005W_JAY291 | rna-NM_001182501.1_JAY291 | cds-NP_013718.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:263335-264501:+ | gene-YMR005W_MUCL30387 | rna-NM_001182501.1_MUCL30387 | cds-NP_013718.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:267992-269158:+ | gene-YMR005W_MUCL30388 | rna-NM_001182501.1_MUCL30388 | cds-NP_013718.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:258887-260053:+ | gene-YMR005W_MUCL39482 | rna-NM_001182501.1_MUCL39482 | cds-NP_013718.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:264694-265860:+ | gene-YMR005W_MUCL42920 | rna-NM_001182501.1_MUCL42920 | cds-NP_013718.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:275999-277165:+ | gene-YMR005W_NCIM3186 | rna-NM_001182501.1_NCIM3186 | cds-NP_013718.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:258804-259970:+ | gene-YMR005W_NCYC1407 | rna-NM_001182501.1_NCYC1407 | cds-NP_013718.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:264737-265903:+ | gene-YMR005W_PE2H3 | rna-NM_001182501.1_PE2H3 | cds-NP_013718.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:270832-271998:+ | gene-YMR005W_PE2H4 | rna-NM_001182501.1_PE2H4 | cds-NP_013718.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:276045-277211:+ | gene-YMR005W_S288C | rna-NM_001182501.1_S288C | cds-NP_013718.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:261057-262223:- | gene-YMR005W_SA1 | rna-NM_001182501.1_SA1 | cds-NP_013718.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:258660-259826:+ | gene-YMR005W_ThermosaccDry | rna-NM_001182501.1_ThermosaccDry | cds-NP_013718.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:262624-263790:+ | gene-YMR005W_VR1 | rna-NM_001182501.1_VR1 | cds-NP_013718.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:237718-238884:+ | gene-YMR005W_ZTW1 | rna-NM_001182501.1_ZTW1 | cds-NP_013718.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:270203-271375:+ | gene-YMR005W_Sparadoxus | rna-NM_001182501.1_Sparadoxus | cds-NP_013718.1_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |