Gene name: TAF3
Reference locus (S288C): YPL011C
Gene biotype: protein_coding
Description: TFIID subunit (47 kDa); involved in promoter binding and RNA polymerase II transcription initiation; Belongs to the TAF3 family
Top 10 interactors (score): TAF5 (0.999); SPT15 (0.999); TAF6 (0.999); TAF12 (0.999); TAF4 (0.999); TAF8 (0.999); TAF2 (0.999); TAF10 (0.999); TAF1 (0.999); TAF7 (0.999); TAF14 (0.999); TAF11 (0.996); TAF13 (0.996); TAF9 (0.99); PRP45 (0.772); ADA2 (0.599); YGR190C (0.485); YLR302C (0.485); YNG1 (0.483); HTB1 (0.483)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:505131-506192:- | gene-YPL011C_AKU4011 | rna-NM_001183825.1_AKU4011 | cds-NP_015314.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:391028-392089:+ | gene-YPL011C_BG1 | rna-NM_001183825.1_BG1 | cds-NP_015314.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:582068-583129:- | gene-YPL011C_Bruggeman | rna-NM_001183825.1_Bruggeman | cds-NP_015314.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:624532-625593:- | gene-YPL011C_CAT1 | rna-NM_001183825.1_CAT1 | cds-NP_015314.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:509293-510354:- | gene-YPL011C_CBS1585 | rna-NM_001183825.1_CBS1585 | cds-NP_015314.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:523339-524400:- | gene-YPL011C_CBS436 | rna-NM_001183825.1_CBS436 | cds-NP_015314.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:513045-514106:- | gene-YPL011C_CBS6412 | rna-NM_001183825.1_CBS6412 | cds-NP_015314.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:505768-506829:- | gene-YPL011C_CBS6413 | rna-NM_001183825.1_CBS6413 | cds-NP_015314.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:533649-534710:- | gene-YPL011C_CENPK1137D | rna-NM_001183825.1_CENPK1137D | cds-NP_015314.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:503552-504613:- | gene-YPL011C_EthanolRed | rna-NM_001183825.1_EthanolRed | cds-NP_015314.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:511382-512443:- | gene-YPL011C_FaliES1 | rna-NM_001183825.1_FaliES1 | cds-NP_015314.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:119932-120993:- | gene-YPL011C_JAY291 | rna-NM_001183825.1_JAY291 | cds-NP_015314.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:523018-524079:- | gene-YPL011C_MUCL30387 | rna-NM_001183825.1_MUCL30387 | cds-NP_015314.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:522125-523186:- | gene-YPL011C_MUCL30388 | rna-NM_001183825.1_MUCL30388 | cds-NP_015314.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:502533-503594:- | gene-YPL011C_MUCL39482 | rna-NM_001183825.1_MUCL39482 | cds-NP_015314.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:561609-562670:- | gene-YPL011C_MUCL42920 | rna-NM_001183825.1_MUCL42920 | cds-NP_015314.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:533625-534686:- | gene-YPL011C_NCIM3186 | rna-NM_001183825.1_NCIM3186 | cds-NP_015314.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:509807-510868:- | gene-YPL011C_NCYC1407 | rna-NM_001183825.1_NCYC1407 | cds-NP_015314.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:516460-517521:- | gene-YPL011C_PE2H3 | rna-NM_001183825.1_PE2H3 | cds-NP_015314.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:516075-517136:- | gene-YPL011C_PE2H4 | rna-NM_001183825.1_PE2H4 | cds-NP_015314.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:533642-534703:- | gene-YPL011C_S288C | rna-NM_001183825.1_S288C | cds-NP_015314.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000076.1:30370-31431:- | gene-YPL011C_SA1 | rna-NM_001183825.1_SA1 | cds-NP_015314.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:511181-512242:- | gene-YPL011C_ThermosaccDry | rna-NM_001183825.1_ThermosaccDry | cds-NP_015314.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:526560-527621:- | gene-YPL011C_VR1 | rna-NM_001183825.1_VR1 | cds-NP_015314.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:510466-511527:- | gene-YPL011C_ZTW1 | rna-NM_001183825.1_ZTW1 | cds-NP_015314.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:510343-511404:- | gene-YPL011C_Sparadoxus | rna-NM_001183825.1_Sparadoxus | cds-NP_015314.1_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |