Gene name: TAF2
Reference locus (S288C): YCR042C
Gene biotype: protein_coding
Description: Transcription initiation factor tfiid subunit 2; TFIID subunit (150 kDa); involved in RNA polymerase II transcription initiation
Top 10 interactors (score): TAF6 (0.999); TAF9 (0.999); TAF4 (0.999); TAF1 (0.999); TAF13 (0.999); TAF3 (0.999); TAF14 (0.999); TAF8 (0.999); SPT15 (0.999); TAF12 (0.999); TAF7 (0.999); TAF10 (0.999); TAF5 (0.999); TAF11 (0.999); TFG1 (0.996); SUA7 (0.965); TFG2 (0.912); MOT1 (0.872); RPB2 (0.862); TOA2 (0.862)
Homologues (species, bitscore): TAF2 (Homo sapiens, 161.4); Taf2 (Mus musculus, 158.7); taf2 (Danio rerio, 168.7); taf2 (Xenopus tropicalis, 169.1); Taf2 (Drosophila melanogaster, 191.0); taf-2 (Caenorhabditis elegans, 141.0); TAF2 (Arabidopsis thaliana, 192.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:195651-199868:- | gene-YCR042C_AKU4011 | rna-NM_001178756.1_AKU4011 | cds-NP_009971.1_AKU4011 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:49131-53354:- | gene-YCR042C_BG1 | rna-NM_001178756.1_BG1 | cds-NP_009971.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:191366-195583:- | gene-YCR042C_Bruggeman | rna-NM_001178756.1_Bruggeman | cds-NP_009971.1_Bruggeman | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:202964-207187:- | gene-YCR042C_CAT1 | rna-NM_001178756.1_CAT1 | cds-NP_009971.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:190412-194629:- | gene-YCR042C_CBS1585 | rna-NM_001178756.1_CBS1585 | cds-NP_009971.1_CBS1585 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:202308-206534:- | gene-YCR042C_CBS436 | rna-NM_001178756.1_CBS436 | cds-NP_009971.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:182134-186351:- | gene-YCR042C_CBS6412 | rna-NM_001178756.1_CBS6412 | cds-NP_009971.1_CBS6412 | 99.1 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:196501-200718:- | gene-YCR042C_CBS6413 | rna-NM_001178756.1_CBS6413 | cds-NP_009971.1_CBS6413 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:200240-204463:- | gene-YCR042C_CENPK1137D | rna-NM_001178756.1_CENPK1137D | cds-NP_009971.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:191605-195822:- | gene-YCR042C_EthanolRed | rna-NM_001178756.1_EthanolRed | cds-NP_009971.1_EthanolRed | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:196777-200994:- | gene-YCR042C_FaliES1 | rna-NM_001178756.1_FaliES1 | cds-NP_009971.1_FaliES1 | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000014.1:22174-26397:+ | gene-YCR042C_JAY291 | rna-NM_001178756.1_JAY291 | cds-NP_009971.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:188585-192802:- | gene-YCR042C_MUCL30387 | rna-NM_001178756.1_MUCL30387 | cds-NP_009971.1_MUCL30387 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:187971-192188:- | gene-YCR042C_MUCL30388 | rna-NM_001178756.1_MUCL30388 | cds-NP_009971.1_MUCL30388 | 99.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:196985-201202:- | gene-YCR042C_MUCL39482 | rna-NM_001178756.1_MUCL39482 | cds-NP_009971.1_MUCL39482 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:193429-197652:- | gene-YCR042C_MUCL42920 | rna-NM_001178756.1_MUCL42920 | cds-NP_009971.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:200806-205029:- | gene-YCR042C_NCIM3186 | rna-NM_001178756.1_NCIM3186 | cds-NP_009971.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:197913-202130:- | gene-YCR042C_NCYC1407 | rna-NM_001178756.1_NCYC1407 | cds-NP_009971.1_NCYC1407 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:206538-210761:- | gene-YCR042C_PE2H3 | rna-NM_001178756.1_PE2H3 | cds-NP_009971.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:201069-205292:- | gene-YCR042C_PE2H4 | rna-NM_001178756.1_PE2H4 | cds-NP_009971.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:201174-205397:- | gene-YCR042C_S288C | rna-NM_001178756.1_S288C | cds-NP_009971.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:1057-5280:- | gene-YCR042C_SA1 | rna-NM_001178756.1_SA1 | cds-NP_009971.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:196753-200970:- | gene-YCR042C_ThermosaccDry | rna-NM_001178756.1_ThermosaccDry | cds-NP_009971.1_ThermosaccDry | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:208025-212248:- | gene-YCR042C_VR1 | rna-NM_001178756.1_VR1 | cds-NP_009971.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:194561-198778:- | gene-YCR042C_ZTW1 | rna-NM_001178756.1_ZTW1 | cds-NP_009971.1_ZTW1 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:228701-232911:- | gene-YCR042C_Sparadoxus | rna-NM_001178756.1_Sparadoxus | cds-NP_009971.1_Sparadoxus | 86.3 | 99.6 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |