Gene name: TAF13
Reference locus (S288C): YML098W
Gene biotype: protein_coding
Description: TFIID subunit (19 kDa); involved in RNA polymerase II transcription initiation, similar to histone H4 with atypical histone fold motif of Spt3-like transcription factors
Top 10 interactors (score): TAF4 (0.999); TAF9 (0.999); TAF6 (0.999); TAF5 (0.999); TAF11 (0.999); TAF7 (0.999); TAF10 (0.999); TAF1 (0.999); TAF8 (0.999); SPT15 (0.999); TAF12 (0.999); TAF2 (0.999); TAF3 (0.996); TAF14 (0.996); TOA2 (0.98); RPB11 (0.963); SPT3 (0.953); SUA7 (0.924); TFA2 (0.867); SSL1 (0.837)
Homologues (species, bitscore): TAF13 (Homo sapiens, 61.2); Taf13 (Mus musculus, 61.2); taf13 (Danio rerio, 60.5); taf13 (Xenopus tropicalis, 60.8); Taf13 (Drosophila melanogaster, 58.9); taf-13 (Caenorhabditis elegans, 61.2); TAF13 (Arabidopsis thaliana, 63.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:70988-71491:+ | gene-YML098W_AKU4011 | rna-NM_001182458.1_AKU4011 | cds-NP_013611.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:404635-405138:- | gene-YML098W_BG1 | rna-NM_001182458.1_BG1 | cds-NP_013611.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:77244-77747:+ | gene-YML098W_Bruggeman | rna-NM_001182458.1_Bruggeman | cds-NP_013611.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:78803-79306:+ | gene-YML098W_CAT1 | rna-NM_001182458.1_CAT1 | cds-NP_013611.1_CAT1 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:70990-71493:+ | gene-YML098W_CBS1585 | rna-NM_001182458.1_CBS1585 | cds-NP_013611.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:76983-77486:+ | gene-YML098W_CBS436 | rna-NM_001182458.1_CBS436 | cds-NP_013611.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:71753-72256:+ | gene-YML098W_CBS6412 | rna-NM_001182458.1_CBS6412 | cds-NP_013611.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:70217-70720:+ | gene-YML098W_CBS6413 | rna-NM_001182458.1_CBS6413 | cds-NP_013611.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:71858-72361:+ | gene-YML098W_CENPK1137D | rna-NM_001182458.1_CENPK1137D | cds-NP_013611.1_CENPK1137D | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:71494-71997:+ | gene-YML098W_EthanolRed | rna-NM_001182458.1_EthanolRed | cds-NP_013611.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:71771-72274:+ | gene-YML098W_FaliES1 | rna-NM_001182458.1_FaliES1 | cds-NP_013611.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000345.1:17906-18409:- | gene-YML098W_JAY291 | rna-NM_001182458.1_JAY291 | cds-NP_013611.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:75689-76192:+ | gene-YML098W_MUCL30387 | rna-NM_001182458.1_MUCL30387 | cds-NP_013611.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:78914-79417:+ | gene-YML098W_MUCL30388 | rna-NM_001182458.1_MUCL30388 | cds-NP_013611.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:71004-71507:+ | gene-YML098W_MUCL39482 | rna-NM_001182458.1_MUCL39482 | cds-NP_013611.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:75803-76306:+ | gene-YML098W_MUCL42920 | rna-NM_001182458.1_MUCL42920 | cds-NP_013611.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:77221-77724:+ | gene-YML098W_NCIM3186 | rna-NM_001182458.1_NCIM3186 | cds-NP_013611.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:71798-72301:+ | gene-YML098W_NCYC1407 | rna-NM_001182458.1_NCYC1407 | cds-NP_013611.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:77233-77736:+ | gene-YML098W_PE2H3 | rna-NM_001182458.1_PE2H3 | cds-NP_013611.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:77171-77674:+ | gene-YML098W_PE2H4 | rna-NM_001182458.1_PE2H4 | cds-NP_013611.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:77267-77770:+ | gene-YML098W_S288C | rna-NM_001182458.1_S288C | cds-NP_013611.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000054.1:69237-69740:+ | gene-YML098W_SA1 | rna-NM_001182458.1_SA1 | cds-NP_013611.1_SA1 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:71067-71570:+ | gene-YML098W_ThermosaccDry | rna-NM_001182458.1_ThermosaccDry | cds-NP_013611.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:75452-75955:+ | gene-YML098W_VR1 | rna-NM_001182458.1_VR1 | cds-NP_013611.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:50568-51071:+ | gene-YML098W_ZTW1 | rna-NM_001182458.1_ZTW1 | cds-NP_013611.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:81850-82353:+ | gene-YML098W_Sparadoxus | rna-NM_001182458.1_Sparadoxus | cds-NP_013611.1_Sparadoxus | 91.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |