Gene name: TAF11
Reference locus (S288C): YML015C
Gene biotype: protein_coding
Description: TFIID subunit (40 kDa); involved in RNA polymerase II transcription initiation, similar to histone H3 with atypical histone fold motif of Spt3-like transcription factors; Belongs to the TAF11 family
Top 10 interactors (score): TAF8 (0.999); TAF2 (0.999); TAF12 (0.999); SPT15 (0.999); TAF7 (0.999); TAF1 (0.999); TAF6 (0.999); TAF5 (0.999); TAF4 (0.999); TAF9 (0.999); TAF13 (0.999); TAF10 (0.999); TAF3 (0.996); TAF14 (0.99); SUA7 (0.967); TOA2 (0.936); TOA1 (0.882); TFA2 (0.852); SPT3 (0.837); TFG1 (0.833)
Homologues (species, bitscore): TAF11 (Homo sapiens, 65.5); Taf11 (Mus musculus, 62.8); taf11 (Danio rerio, 67.0); taf11 (Xenopus tropicalis, 60.8); Taf11 (Drosophila melanogaster, 59.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:291543-292583:- | gene-YML015C_AKU4011 | rna-NM_001182373.1_AKU4011 | cds-NP_013697.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:250232-251272:+ | gene-YML015C_BG1 | rna-NM_001182373.1_BG1 | cds-NP_013697.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:231523-232563:- | gene-YML015C_Bruggeman | rna-NM_001182373.1_Bruggeman | cds-NP_013697.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:234033-235073:- | gene-YML015C_CAT1 | rna-NM_001182373.1_CAT1 | cds-NP_013697.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:224521-225561:- | gene-YML015C_CBS1585 | rna-NM_001182373.1_CBS1585 | cds-NP_013697.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:230048-231088:- | gene-YML015C_CBS436 | rna-NM_001182373.1_CBS436 | cds-NP_013697.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:338254-339294:- | gene-YML015C_CBS6412 | rna-NM_001182373.1_CBS6412 | cds-NP_013697.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:223776-224816:- | gene-YML015C_CBS6413 | rna-NM_001182373.1_CBS6413 | cds-NP_013697.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:236720-237760:- | gene-YML015C_CENPK1137D | rna-NM_001182373.1_CENPK1137D | cds-NP_013697.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:224555-225595:- | gene-YML015C_EthanolRed | rna-NM_001182373.1_EthanolRed | cds-NP_013697.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:227521-228561:- | gene-YML015C_FaliES1 | rna-NM_001182373.1_FaliES1 | cds-NP_013697.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:208367-209407:+ | gene-YML015C_JAY291 | rna-NM_001182373.1_JAY291 | cds-NP_013697.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:229262-230302:- | gene-YML015C_MUCL30387 | rna-NM_001182373.1_MUCL30387 | cds-NP_013697.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:233923-234963:- | gene-YML015C_MUCL30388 | rna-NM_001182373.1_MUCL30388 | cds-NP_013697.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:224801-225841:- | gene-YML015C_MUCL39482 | rna-NM_001182373.1_MUCL39482 | cds-NP_013697.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:230364-231404:- | gene-YML015C_MUCL42920 | rna-NM_001182373.1_MUCL42920 | cds-NP_013697.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:241943-242983:- | gene-YML015C_NCIM3186 | rna-NM_001182373.1_NCIM3186 | cds-NP_013697.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:224736-225776:- | gene-YML015C_NCYC1407 | rna-NM_001182373.1_NCYC1407 | cds-NP_013697.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:230666-231706:- | gene-YML015C_PE2H3 | rna-NM_001182373.1_PE2H3 | cds-NP_013697.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:236761-237801:- | gene-YML015C_PE2H4 | rna-NM_001182373.1_PE2H4 | cds-NP_013697.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:241989-243029:- | gene-YML015C_S288C | rna-NM_001182373.1_S288C | cds-NP_013697.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:295254-296294:+ | gene-YML015C_SA1 | rna-NM_001182373.1_SA1 | cds-NP_013697.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:224583-225623:- | gene-YML015C_ThermosaccDry | rna-NM_001182373.1_ThermosaccDry | cds-NP_013697.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:228555-229595:- | gene-YML015C_VR1 | rna-NM_001182373.1_VR1 | cds-NP_013697.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:203642-204682:- | gene-YML015C_ZTW1 | rna-NM_001182373.1_ZTW1 | cds-NP_013697.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:235311-236351:- | gene-YML015C_Sparadoxus | rna-NM_001182373.1_Sparadoxus | cds-NP_013697.1_Sparadoxus | 91.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |