Gene name: TAF1
Reference locus (S288C): YGR274C
Gene biotype: protein_coding
Description: TFIID subunit, involved in RNA pol II transcription initiation; possesses in vitro histone acetyltransferase activity but its role in vivo appears to be minor; involved in promoter binding and G1/S progression; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): TAF6 (0.999); TAF13 (0.999); TAF3 (0.999); TAF7 (0.999); SPT15 (0.999); TAF12 (0.999); TAF8 (0.999); TAF2 (0.999); TAF5 (0.999); TAF11 (0.999); TAF4 (0.999); TAF9 (0.999); TAF10 (0.999); SUA7 (0.999); TAF14 (0.999); TFG1 (0.996); TOA2 (0.987); SNF5 (0.97); CFT2 (0.966); PTA1 (0.965)
Homologues (species, bitscore): TAF1 (Homo sapiens, 252.7); Taf1 (Mus musculus, 236.5); taf1 (Danio rerio, 224.9); taf1 (Xenopus tropicalis, 241.1); Taf1 (Drosophila melanogaster, 224.6); taf-1 (Caenorhabditis elegans, 193.7); HAF01 (Arabidopsis thaliana, 128.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:1005322-1008522:- | gene-YGR274C_AKU4011 | rna-NM_001181403.2_AKU4011 | cds-NP_011790.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:285330-288530:- | gene-YGR274C_BG1 | rna-NM_001181403.2_BG1 | cds-NP_011790.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:1013845-1017045:- | gene-YGR274C_Bruggeman | rna-NM_001181403.2_Bruggeman | cds-NP_011790.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:1013281-1016481:- | gene-YGR274C_CAT1 | rna-NM_001181403.2_CAT1 | cds-NP_011790.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:1008192-1011392:- | gene-YGR274C_CBS1585 | rna-NM_001181403.2_CBS1585 | cds-NP_011790.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:1011822-1015022:- | gene-YGR274C_CBS436 | rna-NM_001181403.2_CBS436 | cds-NP_011790.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:999082-1002282:- | gene-YGR274C_CBS6412 | rna-NM_001181403.2_CBS6412 | cds-NP_011790.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:1005137-1008337:- | gene-YGR274C_CBS6413 | rna-NM_001181403.2_CBS6413 | cds-NP_011790.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:1039565-1042765:- | gene-YGR274C_CENPK1137D | rna-NM_001181403.2_CENPK1137D | cds-NP_011790.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:993171-996371:- | gene-YGR274C_EthanolRed | rna-NM_001181403.2_EthanolRed | cds-NP_011790.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:997977-1001177:- | gene-YGR274C_FaliES1 | rna-NM_001181403.2_FaliES1 | cds-NP_011790.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:29133-32333:+ | gene-YGR274C_JAY291 | rna-NM_001181403.2_JAY291 | cds-NP_011790.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:1011586-1014786:- | gene-YGR274C_MUCL30387 | rna-NM_001181403.2_MUCL30387 | cds-NP_011790.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:1009718-1012918:- | gene-YGR274C_MUCL30388 | rna-NM_001181403.2_MUCL30388 | cds-NP_011790.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:1003298-1006498:- | gene-YGR274C_MUCL39482 | rna-NM_001181403.2_MUCL39482 | cds-NP_011790.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:1021171-1024371:- | gene-YGR274C_MUCL42920 | rna-NM_001181403.2_MUCL42920 | cds-NP_011790.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:1039895-1043095:- | gene-YGR274C_NCIM3186 | rna-NM_001181403.2_NCIM3186 | cds-NP_011790.1_NCIM3186 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:998927-1002127:- | gene-YGR274C_NCYC1407 | rna-NM_001181403.2_NCYC1407 | cds-NP_011790.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:1024122-1027322:- | gene-YGR274C_PE2H3 | rna-NM_001181403.2_PE2H3 | cds-NP_011790.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:1028961-1032161:- | gene-YGR274C_PE2H4 | rna-NM_001181403.2_PE2H4 | cds-NP_011790.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:1039895-1043095:- | gene-YGR274C_S288C | rna-NM_001181403.2_S288C | cds-NP_011790.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000063.1:38113-41313:- | gene-YGR274C_SA1 | rna-NM_001181403.2_SA1 | cds-NP_011790.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:1018497-1021697:- | gene-YGR274C_ThermosaccDry | rna-NM_001181403.2_ThermosaccDry | cds-NP_011790.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1124282-1127482:- | gene-YGR274C_VR1 | rna-NM_001181403.2_VR1 | cds-NP_011790.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:319908-323108:- | gene-YGR274C_ZTW1 | rna-NM_001181403.2_ZTW1 | cds-NP_011790.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:1010589-1013792:- | gene-YGR274C_Sparadoxus | rna-NM_001181403.2_Sparadoxus | cds-NP_011790.1_Sparadoxus | 90.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |