Gene name: SYT1
Reference locus (S288C): YPR095C
Gene biotype: protein_coding
Description: Guanine nucleotide exchange factor (GEF) for Arf proteins; promotes activation of Arl1p, which recruits Imh1p to the Golgi; involved in vesicular transport; member of the Sec7-domain family; contains a PH domain
Top 10 interactors (score): ARL1 (0.932); ARF3 (0.921); ARF2 (0.903); ARF1 (0.897); YEL1 (0.896); AGE2 (0.834); AGE1 (0.828); YPT31 (0.77); BIG1 (0.692); GTS1 (0.623); ARL3 (0.612); GSF2 (0.611); LSB5 (0.611); SPO71 (0.581); BUD2 (0.555); YPT32 (0.554); CDC42 (0.542); GEA1 (0.54); SAR1 (0.53); SEC63 (0.52)
Homologues (species, bitscore): IQSEC1 (Homo sapiens, 70.5); Iqsec1 (Mus musculus, 70.9); IQSEC1 (Danio rerio, 71.2); iqsec2 (Xenopus tropicalis, 67.8); Sec71 (Drosophila melanogaster, 65.5); M02B7.5 (Caenorhabditis elegans, 83.2); GNL2 (Arabidopsis thaliana, 73.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:692717-696397:- | gene-YPR095C_AKU4011 | rna-NM_001184192.1_AKU4011 | cds-NP_015420.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:201280-204960:+ | gene-YPR095C_BG1 | rna-NM_001184192.1_BG1 | cds-NP_015420.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:770396-774076:- | gene-YPR095C_Bruggeman | rna-NM_001184192.1_Bruggeman | cds-NP_015420.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:814696-818376:- | gene-YPR095C_CAT1 | rna-NM_001184192.1_CAT1 | cds-NP_015420.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:696644-700324:- | gene-YPR095C_CBS1585 | rna-NM_001184192.1_CBS1585 | cds-NP_015420.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:711272-714952:- | gene-YPR095C_CBS436 | rna-NM_001184192.1_CBS436 | cds-NP_015420.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:699779-703459:- | gene-YPR095C_CBS6412 | rna-NM_001184192.1_CBS6412 | cds-NP_015420.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:693601-697281:- | gene-YPR095C_CBS6413 | rna-NM_001184192.1_CBS6413 | cds-NP_015420.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:721015-724695:- | gene-YPR095C_CENPK1137D | rna-NM_001184192.1_CENPK1137D | cds-NP_015420.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1019715-1023395:- | gene-YPR095C_EthanolRed | rna-NM_001184192.1_EthanolRed | cds-NP_015420.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:698548-702228:- | gene-YPR095C_FaliES1 | rna-NM_001184192.1_FaliES1 | cds-NP_015420.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000094.1:20441-24121:- | gene-YPR095C_JAY291 | rna-NM_001184192.1_JAY291 | cds-NP_015420.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:711654-715334:- | gene-YPR095C_MUCL30387 | rna-NM_001184192.1_MUCL30387 | cds-NP_015420.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:710344-714024:- | gene-YPR095C_MUCL30388 | rna-NM_001184192.1_MUCL30388 | cds-NP_015420.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:689649-693329:- | gene-YPR095C_MUCL39482 | rna-NM_001184192.1_MUCL39482 | cds-NP_015420.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:752495-756175:- | gene-YPR095C_MUCL42920 | rna-NM_001184192.1_MUCL42920 | cds-NP_015420.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:721020-724700:- | gene-YPR095C_NCIM3186 | rna-NM_001184192.1_NCIM3186 | cds-NP_015420.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:698075-701755:- | gene-YPR095C_NCYC1407 | rna-NM_001184192.1_NCYC1407 | cds-NP_015420.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:704477-708157:- | gene-YPR095C_PE2H3 | rna-NM_001184192.1_PE2H3 | cds-NP_015420.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:704125-707805:- | gene-YPR095C_PE2H4 | rna-NM_001184192.1_PE2H4 | cds-NP_015420.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:721037-724717:- | gene-YPR095C_S288C | rna-NM_001184192.1_S288C | cds-NP_015420.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:19155-22835:- | gene-YPR095C_SA1 | rna-NM_001184192.1_SA1 | cds-NP_015420.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:698323-702003:- | gene-YPR095C_ThermosaccDry | rna-NM_001184192.1_ThermosaccDry | cds-NP_015420.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:714966-718646:- | gene-YPR095C_VR1 | rna-NM_001184192.1_VR1 | cds-NP_015420.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:697542-701222:- | gene-YPR095C_ZTW1 | rna-NM_001184192.1_ZTW1 | cds-NP_015420.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:698285-701983:- | gene-YPR095C_Sparadoxus | rna-NM_001184192.1_Sparadoxus | cds-NP_015420.1_Sparadoxus | 87.2 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |