Gene name: SYS1
Reference locus (S288C): YJL004C
Gene biotype: protein_coding
Description: Protein SYS1; Integral membrane protein of the Golgi; required for targeting of the Arf-like GTPase Arl3p to the Golgi; multicopy suppressor of ypt6 null mutation
Top 10 interactors (score): ARL3 (0.994); SEC24 (0.958); YPT6 (0.935); IMH1 (0.885); MON2 (0.883); SEC23 (0.854); RIC1 (0.854); MAK10 (0.852); USO1 (0.848); BET1 (0.842); SED5 (0.827); COG3 (0.82); RUD3 (0.812); SEC13 (0.785); ARL1 (0.783); GYP1 (0.783); ARF1 (0.778); COG6 (0.773); YPL264C (0.769); MAK3 (0.766)
Homologues (species, bitscore): sys1 (Danio rerio, 54.7); sys1 (Xenopus tropicalis, 51.6); CG11753 (Drosophila melanogaster, 57.8); T03F1.12 (Caenorhabditis elegans, 52.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:414757-415368:- | gene-YJL004C_AKU4011 | rna-NM_001181438.1_AKU4011 | cds-NP_012530.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:197357-197968:+ | gene-YJL004C_BG1 | rna-NM_001181438.1_BG1 | cds-NP_012530.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:428849-429460:- | gene-YJL004C_Bruggeman | rna-NM_001181438.1_Bruggeman | cds-NP_012530.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:432798-433409:- | gene-YJL004C_CAT1 | rna-NM_001181438.1_CAT1 | cds-NP_012530.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:426337-426948:- | gene-YJL004C_CBS1585 | rna-NM_001181438.1_CBS1585 | cds-NP_012530.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:445323-445934:- | gene-YJL004C_CBS436 | rna-NM_001181438.1_CBS436 | cds-NP_012530.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:414571-415182:- | gene-YJL004C_CBS6412 | rna-NM_001181438.1_CBS6412 | cds-NP_012530.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:416792-417403:- | gene-YJL004C_CBS6413 | rna-NM_001181438.1_CBS6413 | cds-NP_012530.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:414078-414689:- | gene-YJL004C_CENPK1137D | rna-NM_001181438.1_CENPK1137D | cds-NP_012530.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:419725-420336:- | gene-YJL004C_EthanolRed | rna-NM_001181438.1_EthanolRed | cds-NP_012530.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:430865-431476:- | gene-YJL004C_FaliES1 | rna-NM_001181438.1_FaliES1 | cds-NP_012530.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000321.1:21756-22367:+ | gene-YJL004C_JAY291 | rna-NM_001181438.1_JAY291 | cds-NP_012530.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:429180-429791:- | gene-YJL004C_MUCL30387 | rna-NM_001181438.1_MUCL30387 | cds-NP_012530.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:425703-426314:- | gene-YJL004C_MUCL30388 | rna-NM_001181438.1_MUCL30388 | cds-NP_012530.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:419671-420282:- | gene-YJL004C_MUCL39482 | rna-NM_001181438.1_MUCL39482 | cds-NP_012530.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:425116-425727:- | gene-YJL004C_MUCL42920 | rna-NM_001181438.1_MUCL42920 | cds-NP_012530.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:431568-432179:- | gene-YJL004C_NCIM3186 | rna-NM_001181438.1_NCIM3186 | cds-NP_012530.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:417573-418184:- | gene-YJL004C_NCYC1407 | rna-NM_001181438.1_NCYC1407 | cds-NP_012530.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:435981-436592:- | gene-YJL004C_PE2H3 | rna-NM_001181438.1_PE2H3 | cds-NP_012530.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:429675-430286:- | gene-YJL004C_PE2H4 | rna-NM_001181438.1_PE2H4 | cds-NP_012530.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:431589-432200:- | gene-YJL004C_S288C | rna-NM_001181438.1_S288C | cds-NP_012530.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:227599-228210:- | gene-YJL004C_SA1 | rna-NM_001181438.1_SA1 | cds-NP_012530.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:424525-425136:- | gene-YJL004C_ThermosaccDry | rna-NM_001181438.1_ThermosaccDry | cds-NP_012530.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:426900-427511:- | gene-YJL004C_VR1 | rna-NM_001181438.1_VR1 | cds-NP_012530.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:404536-405147:- | gene-YJL004C_ZTW1 | rna-NM_001181438.1_ZTW1 | cds-NP_012530.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:429403-430014:- | gene-YJL004C_Sparadoxus | rna-NM_001181438.1_Sparadoxus | cds-NP_012530.1_Sparadoxus | 87.9 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |