Gene name: SYO1
Reference locus (S288C): YDL063C
Gene biotype: protein_coding
Description: Synchronized import protein 1; Transport adaptor or symportin; facilitates synchronized nuclear coimport of the two 5S-rRNA binding proteins Rpl5p and Rpl11p; binds to nascent Rpl5p during translation; required for biogenesis of the large ribosomal subunit; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus
Top 10 interactors (score): ARX1 (0.993); PUF6 (0.981); RPF2 (0.979); RSA4 (0.975); RRB1 (0.974); UTP25 (0.971); BRX1 (0.969); TSR1 (0.967); NSA2 (0.963); YTM1 (0.961); RPL5 (0.96); NMD3 (0.955); CIC1 (0.955); BMT5 (0.951); NOG1 (0.95); NOP2 (0.949); DBP3 (0.942); DHR2 (0.941); AAH1 (0.941); PWP1 (0.941)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:322870-324732:- | gene-YDL063C_AKU4011 | rna-NM_001180122.1_AKU4011 | cds-NP_010220.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:225315-227177:+ | gene-YDL063C_BG1 | rna-NM_001180122.1_BG1 | cds-NP_010220.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:340654-342516:- | gene-YDL063C_Bruggeman | rna-NM_001180122.1_Bruggeman | cds-NP_010220.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:337026-338888:- | gene-YDL063C_CAT1 | rna-NM_001180122.1_CAT1 | cds-NP_010220.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:321123-322985:- | gene-YDL063C_CBS1585 | rna-NM_001180122.1_CBS1585 | cds-NP_010220.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:337822-339684:- | gene-YDL063C_CBS436 | rna-NM_001180122.1_CBS436 | cds-NP_010220.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:319211-321073:- | gene-YDL063C_CBS6412 | rna-NM_001180122.1_CBS6412 | cds-NP_010220.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:339201-341063:- | gene-YDL063C_CBS6413 | rna-NM_001180122.1_CBS6413 | cds-NP_010220.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:337092-338954:- | gene-YDL063C_CENPK1137D | rna-NM_001180122.1_CENPK1137D | cds-NP_010220.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:333673-335535:- | gene-YDL063C_EthanolRed | rna-NM_001180122.1_EthanolRed | cds-NP_010220.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:339920-341782:- | gene-YDL063C_FaliES1 | rna-NM_001180122.1_FaliES1 | cds-NP_010220.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:109935-111797:- | gene-YDL063C_JAY291 | rna-NM_001180122.1_JAY291 | cds-NP_010220.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:338045-339907:- | gene-YDL063C_MUCL30387 | rna-NM_001180122.1_MUCL30387 | cds-NP_010220.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:329171-331033:- | gene-YDL063C_MUCL30388 | rna-NM_001180122.1_MUCL30388 | cds-NP_010220.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:322226-324088:- | gene-YDL063C_MUCL39482 | rna-NM_001180122.1_MUCL39482 | cds-NP_010220.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:244248-246110:- | gene-YDL063C_MUCL42920 | rna-NM_001180122.1_MUCL42920 | cds-NP_010220.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:338195-340057:- | gene-YDL063C_NCIM3186 | rna-NM_001180122.1_NCIM3186 | cds-NP_010220.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:322251-324113:- | gene-YDL063C_NCYC1407 | rna-NM_001180122.1_NCYC1407 | cds-NP_010220.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:329054-330916:- | gene-YDL063C_PE2H3 | rna-NM_001180122.1_PE2H3 | cds-NP_010220.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:329054-330916:- | gene-YDL063C_PE2H4 | rna-NM_001180122.1_PE2H4 | cds-NP_010220.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:338272-340134:- | gene-YDL063C_S288C | rna-NM_001180122.1_S288C | cds-NP_010220.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:94800-96662:+ | gene-YDL063C_SA1 | rna-NM_001180122.1_SA1 | cds-NP_010220.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:339372-341234:- | gene-YDL063C_ThermosaccDry | rna-NM_001180122.1_ThermosaccDry | cds-NP_010220.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:341942-343804:- | gene-YDL063C_VR1 | rna-NM_001180122.1_VR1 | cds-NP_010220.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:337305-339167:- | gene-YDL063C_ZTW1 | rna-NM_001180122.1_ZTW1 | cds-NP_010220.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:339435-341297:- | gene-YDL063C_Sparadoxus | rna-NM_001180122.1_Sparadoxus | cds-NP_010220.1_Sparadoxus | 89.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |