Gene name: SYF2
Reference locus (S288C): YGR129W
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor SYF2; Member of the NineTeen Complex (NTC); NTC contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; relocalizes to the cytosol in response to hypoxia; isy1 syf2 cells have defective spindles activiating cell cycle arrest
Top 10 interactors (score): SYF1 (0.999); PRP22 (0.999); CEF1 (0.999); SNT309 (0.999); SME1 (0.999); ISY1 (0.999); YJU2 (0.999); CLF1 (0.999); BRR2 (0.999); BUD31 (0.999); LEA1 (0.999); PRP45 (0.999); PRP19 (0.999); PRP46 (0.999); CDC40 (0.999); SNU114 (0.999); SMX2 (0.999); ECM2 (0.999); CWC2 (0.999); PRP16 (0.999)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:729382-730029:+ | gene-YGR129W_AKU4011 | rna-NM_001181258.3_AKU4011 | cds-NP_011645.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:8150-8797:+ | gene-YGR129W_BG1 | rna-NM_001181258.3_BG1 | cds-NP_011645.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:732179-732826:+ | gene-YGR129W_Bruggeman | rna-NM_001181258.3_Bruggeman | cds-NP_011645.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:730832-731479:+ | gene-YGR129W_CAT1 | rna-NM_001181258.3_CAT1 | cds-NP_011645.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:730365-731012:+ | gene-YGR129W_CBS1585 | rna-NM_001181258.3_CBS1585 | cds-NP_011645.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:733750-734397:+ | gene-YGR129W_CBS436 | rna-NM_001181258.3_CBS436 | cds-NP_011645.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:722041-722688:+ | gene-YGR129W_CBS6412 | rna-NM_001181258.3_CBS6412 | cds-NP_011645.3_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:726974-727621:+ | gene-YGR129W_CBS6413 | rna-NM_001181258.3_CBS6413 | cds-NP_011645.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:750112-750759:+ | gene-YGR129W_CENPK1137D | rna-NM_001181258.3_CENPK1137D | cds-NP_011645.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:716406-717053:+ | gene-YGR129W_EthanolRed | rna-NM_001181258.3_EthanolRed | cds-NP_011645.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:720267-720914:+ | gene-YGR129W_FaliES1 | rna-NM_001181258.3_FaliES1 | cds-NP_011645.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000305.1:12935-13582:- | gene-YGR129W_JAY291 | rna-NM_001181258.3_JAY291 | cds-NP_011645.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:839319-839966:+ | gene-YGR129W_MUCL30387 | rna-NM_001181258.3_MUCL30387 | cds-NP_011645.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:732194-732841:+ | gene-YGR129W_MUCL30388 | rna-NM_001181258.3_MUCL30388 | cds-NP_011645.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:726091-726738:+ | gene-YGR129W_MUCL39482 | rna-NM_001181258.3_MUCL39482 | cds-NP_011645.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:736190-736837:+ | gene-YGR129W_MUCL42920 | rna-NM_001181258.3_MUCL42920 | cds-NP_011645.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:750400-751047:+ | gene-YGR129W_NCIM3186 | rna-NM_001181258.3_NCIM3186 | cds-NP_011645.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:720792-721439:+ | gene-YGR129W_NCYC1407 | rna-NM_001181258.3_NCYC1407 | cds-NP_011645.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:740641-741288:+ | gene-YGR129W_PE2H3 | rna-NM_001181258.3_PE2H3 | cds-NP_011645.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:745751-746398:+ | gene-YGR129W_PE2H4 | rna-NM_001181258.3_PE2H4 | cds-NP_011645.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:750400-751047:+ | gene-YGR129W_S288C | rna-NM_001181258.3_S288C | cds-NP_011645.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:171541-172188:+ | gene-YGR129W_SA1 | rna-NM_001181258.3_SA1 | cds-NP_011645.3_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:740890-741537:+ | gene-YGR129W_ThermosaccDry | rna-NM_001181258.3_ThermosaccDry | cds-NP_011645.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:844396-845043:+ | gene-YGR129W_VR1 | rna-NM_001181258.3_VR1 | cds-NP_011645.3_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:43036-43683:+ | gene-YGR129W_ZTW1 | rna-NM_001181258.3_ZTW1 | cds-NP_011645.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:730649-731296:+ | gene-YGR129W_Sparadoxus | rna-NM_001181258.3_Sparadoxus | cds-NP_011645.3_Sparadoxus | 87.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |