Gene name: SYC1
Reference locus (S288C): YOR179C
Gene biotype: protein_coding
Description: Protein SYC1; Subunit of the APT subcomplex of cleavage and polyadenylation factor; may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs; SYC1 has a paralog, YSH1, that arose from the whole genome duplication
Top 10 interactors (score): YTH1 (0.999); SSU72 (0.999); PFS2 (0.999); FIP1 (0.999); CFT1 (0.999); GLC7 (0.999); SWD2 (0.999); PTI1 (0.999); PTA1 (0.999); REF2 (0.999); CFT2 (0.999); RNA15 (0.998); PAP1 (0.994); MPE1 (0.992); RNA14 (0.991); CLP1 (0.975); PCF11 (0.974); YSH1 (0.934); HRP1 (0.874); SEN1 (0.861)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:669179-669745:- | gene-YOR179C_AKU4011 | rna-NM_001183598.1_AKU4011 | cds-NP_014822.1_AKU4011 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:71234-71800:- | gene-YOR179C_BG1 | rna-NM_001183598.1_BG1 | cds-NP_014822.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:653188-653754:- | gene-YOR179C_Bruggeman | rna-NM_001183598.1_Bruggeman | cds-NP_014822.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:654359-654925:- | gene-YOR179C_CAT1 | rna-NM_001183598.1_CAT1 | cds-NP_014822.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:652165-652731:- | gene-YOR179C_CBS1585 | rna-NM_001183598.1_CBS1585 | cds-NP_014822.1_CBS1585 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:650291-650857:- | gene-YOR179C_CBS436 | rna-NM_001183598.1_CBS436 | cds-NP_014822.1_CBS436 | 98.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:649280-649846:- | gene-YOR179C_CBS6412 | rna-NM_001183598.1_CBS6412 | cds-NP_014822.1_CBS6412 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:657923-658489:- | gene-YOR179C_CBS6413 | rna-NM_001183598.1_CBS6413 | cds-NP_014822.1_CBS6413 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:671599-672165:- | gene-YOR179C_CENPK1137D | rna-NM_001183598.1_CENPK1137D | cds-NP_014822.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:645151-645717:- | gene-YOR179C_EthanolRed | rna-NM_001183598.1_EthanolRed | cds-NP_014822.1_EthanolRed | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:650224-650790:- | gene-YOR179C_FaliES1 | rna-NM_001183598.1_FaliES1 | cds-NP_014822.1_FaliES1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000038.1:26746-27312:+ | gene-YOR179C_JAY291 | rna-NM_001183598.1_JAY291 | cds-NP_014822.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:657994-658560:- | gene-YOR179C_MUCL30387 | rna-NM_001183598.1_MUCL30387 | cds-NP_014822.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:665406-665972:- | gene-YOR179C_MUCL30388 | rna-NM_001183598.1_MUCL30388 | cds-NP_014822.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:659495-660061:- | gene-YOR179C_MUCL39482 | rna-NM_001183598.1_MUCL39482 | cds-NP_014822.1_MUCL39482 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:668881-669447:- | gene-YOR179C_MUCL42920 | rna-NM_001183598.1_MUCL42920 | cds-NP_014822.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:671734-672300:- | gene-YOR179C_NCIM3186 | rna-NM_001183598.1_NCIM3186 | cds-NP_014822.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:659593-660159:- | gene-YOR179C_NCYC1407 | rna-NM_001183598.1_NCYC1407 | cds-NP_014822.1_NCYC1407 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:658419-658985:- | gene-YOR179C_PE2H3 | rna-NM_001183598.1_PE2H3 | cds-NP_014822.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:668796-669362:- | gene-YOR179C_PE2H4 | rna-NM_001183598.1_PE2H4 | cds-NP_014822.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:671845-672411:- | gene-YOR179C_S288C | rna-NM_001183598.1_S288C | cds-NP_014822.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:88414-88980:- | gene-YOR179C_SA1 | rna-NM_001183598.1_SA1 | cds-NP_014822.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:649407-649973:- | gene-YOR179C_ThermosaccDry | rna-NM_001183598.1_ThermosaccDry | cds-NP_014822.1_ThermosaccDry | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:713449-714015:- | gene-YOR179C_VR1 | rna-NM_001183598.1_VR1 | cds-NP_014822.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:382814-383380:- | gene-YOR179C_ZTW1 | rna-NM_001183598.1_ZTW1 | cds-NP_014822.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:654904-655461:- | gene-YOR179C_Sparadoxus | rna-NM_001183598.1_Sparadoxus | cds-NP_014822.1_Sparadoxus | 84.5 | 97.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |