SYC1 (YOR179C)


Gene profile

Gene name: SYC1
Reference locus (S288C): YOR179C
Gene biotype: protein_coding

Description: Protein SYC1; Subunit of the APT subcomplex of cleavage and polyadenylation factor; may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs; SYC1 has a paralog, YSH1, that arose from the whole genome duplication

Top 10 interactors (score): YTH1 (0.999); SSU72 (0.999); PFS2 (0.999); FIP1 (0.999); CFT1 (0.999); GLC7 (0.999); SWD2 (0.999); PTI1 (0.999); PTA1 (0.999); REF2 (0.999); CFT2 (0.999); RNA15 (0.998); PAP1 (0.994); MPE1 (0.992); RNA14 (0.991); CLP1 (0.975); PCF11 (0.974); YSH1 (0.934); HRP1 (0.874); SEN1 (0.861)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005309.1:669179-669745:- gene-YOR179C_AKU4011 rna-NM_001183598.1_AKU4011 cds-NP_014822.1_AKU4011 98.7 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000123.1:71234-71800:- gene-YOR179C_BG1 rna-NM_001183598.1_BG1 cds-NP_014822.1_BG1 99.8 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005517.1:653188-653754:- gene-YOR179C_Bruggeman rna-NM_001183598.1_Bruggeman cds-NP_014822.1_Bruggeman 99.6 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005533.1:654359-654925:- gene-YOR179C_CAT1 rna-NM_001183598.1_CAT1 cds-NP_014822.1_CAT1 99.8 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005373.1:652165-652731:- gene-YOR179C_CBS1585 rna-NM_001183598.1_CBS1585 cds-NP_014822.1_CBS1585 98.7 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005357.1:650291-650857:- gene-YOR179C_CBS436 rna-NM_001183598.1_CBS436 cds-NP_014822.1_CBS436 98.2 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005341.1:649280-649846:- gene-YOR179C_CBS6412 rna-NM_001183598.1_CBS6412 cds-NP_014822.1_CBS6412 98.7 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005325.1:657923-658489:- gene-YOR179C_CBS6413 rna-NM_001183598.1_CBS6413 cds-NP_014822.1_CBS6413 98.7 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001536.1:671599-672165:- gene-YOR179C_CENPK1137D rna-NM_001183598.1_CENPK1137D cds-NP_014822.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005485.1:645151-645717:- gene-YOR179C_EthanolRed rna-NM_001183598.1_EthanolRed cds-NP_014822.1_EthanolRed 98.7 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005549.1:650224-650790:- gene-YOR179C_FaliES1 rna-NM_001183598.1_FaliES1 cds-NP_014822.1_FaliES1 98.7 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000038.1:26746-27312:+ gene-YOR179C_JAY291 rna-NM_001183598.1_JAY291 cds-NP_014822.1_JAY291 99.8 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005421.1:657994-658560:- gene-YOR179C_MUCL30387 rna-NM_001183598.1_MUCL30387 cds-NP_014822.1_MUCL30387 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005453.1:665406-665972:- gene-YOR179C_MUCL30388 rna-NM_001183598.1_MUCL30388 cds-NP_014822.1_MUCL30388 98.9 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005293.1:659495-660061:- gene-YOR179C_MUCL39482 rna-NM_001183598.1_MUCL39482 cds-NP_014822.1_MUCL39482 98.7 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005437.1:668881-669447:- gene-YOR179C_MUCL42920 rna-NM_001183598.1_MUCL42920 cds-NP_014822.1_MUCL42920 99.8 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011824.1:671734-672300:- gene-YOR179C_NCIM3186 rna-NM_001183598.1_NCIM3186 cds-NP_014822.1_NCIM3186 98.7 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005277.1:659593-660159:- gene-YOR179C_NCYC1407 rna-NM_001183598.1_NCYC1407 cds-NP_014822.1_NCYC1407 98.7 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994154.1:658419-658985:- gene-YOR179C_PE2H3 rna-NM_001183598.1_PE2H3 cds-NP_014822.1_PE2H3 99.8 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999886.1:668796-669362:- gene-YOR179C_PE2H4 rna-NM_001183598.1_PE2H4 cds-NP_014822.1_PE2H4 99.8 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001147.6:671845-672411:- gene-YOR179C_S288C rna-NM_001183598.1_S288C cds-NP_014822.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000006.1:88414-88980:- gene-YOR179C_SA1 rna-NM_001183598.1_SA1 cds-NP_014822.1_SA1 99.8 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005501.1:649407-649973:- gene-YOR179C_ThermosaccDry rna-NM_001183598.1_ThermosaccDry cds-NP_014822.1_ThermosaccDry 98.7 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005469.1:713449-714015:- gene-YOR179C_VR1 rna-NM_001183598.1_VR1 cds-NP_014822.1_VR1 99.8 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000032.1:382814-383380:- gene-YOR179C_ZTW1 rna-NM_001183598.1_ZTW1 cds-NP_014822.1_ZTW1 98.9 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047501.1:654904-655461:- gene-YOR179C_Sparadoxus rna-NM_001183598.1_Sparadoxus cds-NP_014822.1_Sparadoxus 84.5 97.8 Verified 1 1 1 False True False False False

Additional files