Gene name: SXM1
Reference locus (S288C): YDR395W
Gene biotype: protein_coding
Description: Importin beta SMX1; Nuclear transport factor (karyopherin); involved in protein transport between the cytoplasm and nucleoplasm; similar to Nmd5p, Cse1p, Lph2p, and the human cellular apoptosis susceptibility protein, CAS1; Belongs to the importin beta family
Top 10 interactors (score): KAP123 (0.982); PSE1 (0.977); KAP95 (0.975); KAP104 (0.973); LHP1 (0.966); MTR10 (0.944); RPA135 (0.928); KAP114 (0.926); KAP122 (0.911); RPA190 (0.903); SRP1 (0.895); GSP1 (0.883); CRM1 (0.871); MSN5 (0.856); LOS1 (0.839); PUF6 (0.791); ECM1 (0.785); NUP100 (0.779); NUP159 (0.776); NSP1 (0.766)
Homologues (species, bitscore): IPO7 (Homo sapiens, 206.8); Ipo7 (Mus musculus, 207.2); ipo7 (Danio rerio, 205.7); ipo7 (Xenopus tropicalis, 187.6); msk (Drosophila melanogaster, 181.4); xpo-2 (Caenorhabditis elegans, 67.0); AT3G59020 (Arabidopsis thaliana, 166.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1203464-1206298:+ | gene-YDR395W_AKU4011 | rna-NM_001180703.3_AKU4011 | cds-NP_010683.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:81950-84784:+ | gene-YDR395W_BG1 | rna-NM_001180703.3_BG1 | cds-NP_010683.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1234350-1237184:+ | gene-YDR395W_Bruggeman | rna-NM_001180703.3_Bruggeman | cds-NP_010683.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1212906-1215740:+ | gene-YDR395W_CAT1 | rna-NM_001180703.3_CAT1 | cds-NP_010683.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1198385-1201219:+ | gene-YDR395W_CBS1585 | rna-NM_001180703.3_CBS1585 | cds-NP_010683.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1217253-1220087:+ | gene-YDR395W_CBS436 | rna-NM_001180703.3_CBS436 | cds-NP_010683.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1194438-1197272:+ | gene-YDR395W_CBS6412 | rna-NM_001180703.3_CBS6412 | cds-NP_010683.3_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1216293-1219127:+ | gene-YDR395W_CBS6413 | rna-NM_001180703.3_CBS6413 | cds-NP_010683.3_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1261987-1264821:+ | gene-YDR395W_CENPK1137D | rna-NM_001180703.3_CENPK1137D | cds-NP_010683.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1207870-1210704:+ | gene-YDR395W_EthanolRed | rna-NM_001180703.3_EthanolRed | cds-NP_010683.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1211180-1214014:+ | gene-YDR395W_FaliES1 | rna-NM_001180703.3_FaliES1 | cds-NP_010683.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000181.1:41522-44356:- | gene-YDR395W_JAY291 | rna-NM_001180703.3_JAY291 | cds-NP_010683.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1217912-1220746:+ | gene-YDR395W_MUCL30387 | rna-NM_001180703.3_MUCL30387 | cds-NP_010683.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1200023-1202857:+ | gene-YDR395W_MUCL30388 | rna-NM_001180703.3_MUCL30388 | cds-NP_010683.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1189713-1192547:+ | gene-YDR395W_MUCL39482 | rna-NM_001180703.3_MUCL39482 | cds-NP_010683.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1132152-1134986:+ | gene-YDR395W_MUCL42920 | rna-NM_001180703.3_MUCL42920 | cds-NP_010683.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1263247-1266081:+ | gene-YDR395W_NCIM3186 | rna-NM_001180703.3_NCIM3186 | cds-NP_010683.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1203685-1206519:+ | gene-YDR395W_NCYC1407 | rna-NM_001180703.3_NCYC1407 | cds-NP_010683.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1213813-1216647:+ | gene-YDR395W_PE2H3 | rna-NM_001180703.3_PE2H3 | cds-NP_010683.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1219386-1222220:+ | gene-YDR395W_PE2H4 | rna-NM_001180703.3_PE2H4 | cds-NP_010683.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1263324-1266158:+ | gene-YDR395W_S288C | rna-NM_001180703.3_S288C | cds-NP_010683.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000071.1:41634-44468:- | gene-YDR395W_SA1 | rna-NM_001180703.3_SA1 | cds-NP_010683.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1215442-1218276:+ | gene-YDR395W_ThermosaccDry | rna-NM_001180703.3_ThermosaccDry | cds-NP_010683.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1230625-1233459:+ | gene-YDR395W_VR1 | rna-NM_001180703.3_VR1 | cds-NP_010683.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:258253-261087:+ | gene-YDR395W_ZTW1 | rna-NM_001180703.3_ZTW1 | cds-NP_010683.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1210553-1213387:+ | gene-YDR395W_Sparadoxus | rna-NM_001180703.3_Sparadoxus | cds-NP_010683.3_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |