Gene name: SWT21
Reference locus (S288C): YNL187W
Gene biotype: protein_coding
Description: Protein involved in mRNA splicing; contains a consensus nuclear export signal (NES) sequence similar to the consensus sequence recognized by Crm1p; interacts genetically with Prp40p and Tgs1p; contains WD40 repeats
Top 10 interactors (score): NAM8 (0.936); MUD1 (0.916); CBC2 (0.867); TGS1 (0.821); MUD2 (0.763); PRP40 (0.759); BRR1 (0.745); SNU71 (0.718); MSL5 (0.712); PRP42 (0.695); SAE3 (0.693); CWC21 (0.67); LEA1 (0.65); YHC1 (0.629); PRP28 (0.628); IST3 (0.62); SIT4 (0.614); SNU56 (0.569); PRP39 (0.555); CBF5 (0.545)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:281761-282834:+ | gene-YNL187W_AKU4011 | rna-NM_001183025.1_AKU4011 | cds-NP_014212.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:185713-186786:+ | gene-YNL187W_BG1 | rna-NM_001183025.1_BG1 | cds-NP_014212.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:291818-292891:+ | gene-YNL187W_Bruggeman | rna-NM_001183025.1_Bruggeman | cds-NP_014212.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:334064-335137:+ | gene-YNL187W_CAT1 | rna-NM_001183025.1_CAT1 | cds-NP_014212.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:282416-283489:+ | gene-YNL187W_CBS1585 | rna-NM_001183025.1_CBS1585 | cds-NP_014212.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:350702-351775:+ | gene-YNL187W_CBS436 | rna-NM_001183025.1_CBS436 | cds-NP_014212.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:277818-278891:+ | gene-YNL187W_CBS6412 | rna-NM_001183025.1_CBS6412 | cds-NP_014212.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:278849-279922:+ | gene-YNL187W_CBS6413 | rna-NM_001183025.1_CBS6413 | cds-NP_014212.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:281822-282895:+ | gene-YNL187W_CENPK1137D | rna-NM_001183025.1_CENPK1137D | cds-NP_014212.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:278747-279820:+ | gene-YNL187W_EthanolRed | rna-NM_001183025.1_EthanolRed | cds-NP_014212.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:274660-275733:+ | gene-YNL187W_FaliES1 | rna-NM_001183025.1_FaliES1 | cds-NP_014212.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000260.1:42821-43894:- | gene-YNL187W_JAY291 | rna-NM_001183025.1_JAY291 | cds-NP_014212.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:287609-288682:+ | gene-YNL187W_MUCL30387 | rna-NM_001183025.1_MUCL30387 | cds-NP_014212.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:321951-323024:+ | gene-YNL187W_MUCL30388 | rna-NM_001183025.1_MUCL30388 | cds-NP_014212.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:279655-280728:+ | gene-YNL187W_MUCL39482 | rna-NM_001183025.1_MUCL39482 | cds-NP_014212.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:282021-283094:+ | gene-YNL187W_MUCL42920 | rna-NM_001183025.1_MUCL42920 | cds-NP_014212.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:287963-289036:+ | gene-YNL187W_NCIM3186 | rna-NM_001183025.1_NCIM3186 | cds-NP_014212.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:281749-282822:+ | gene-YNL187W_NCYC1407 | rna-NM_001183025.1_NCYC1407 | cds-NP_014212.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:278657-279730:+ | gene-YNL187W_PE2H3 | rna-NM_001183025.1_PE2H3 | cds-NP_014212.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:278045-279118:+ | gene-YNL187W_PE2H4 | rna-NM_001183025.1_PE2H4 | cds-NP_014212.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:287994-289067:+ | gene-YNL187W_S288C | rna-NM_001183025.1_S288C | cds-NP_014212.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:124533-125606:- | gene-YNL187W_SA1 | rna-NM_001183025.1_SA1 | cds-NP_014212.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:275517-276590:+ | gene-YNL187W_ThermosaccDry | rna-NM_001183025.1_ThermosaccDry | cds-NP_014212.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:293981-295054:+ | gene-YNL187W_VR1 | rna-NM_001183025.1_VR1 | cds-NP_014212.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:185345-186418:+ | gene-YNL187W_ZTW1 | rna-NM_001183025.1_ZTW1 | cds-NP_014212.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:286024-287097:+ | gene-YNL187W_Sparadoxus | rna-NM_001183025.1_Sparadoxus | cds-NP_014212.1_Sparadoxus | 84.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |