Gene name: SWP82
Reference locus (S288C): YFL049W
Gene biotype: protein_coding
Description: SWI/SNF global transcription activator complex subunit SWP82; Member of the SWI/SNF chromatin remodeling complex; has an as yet unidentified role in the complex; has identifiable counterparts in closely related yeast species; abundantly expressed in many growth conditions; paralog of Npl6p; relocates to the cytosol under hypoxic conditions; Belongs to the RSC7/SWP82 family. SWP82 subfamily
Top 10 interactors (score): ARP7 (0.999); SNF6 (0.999); SNF2 (0.999); SWI3 (0.999); SNF5 (0.999); SNF12 (0.999); RTT102 (0.998); ARP9 (0.998); SWI1 (0.998); SNF11 (0.993); TAF14 (0.99); CBC2 (0.731); NPL6 (0.727); YFL012W (0.713); YFR006W (0.712); RSC30 (0.702); STH1 (0.669); RSC4 (0.661); RSC8 (0.657); OAF3 (0.651)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:33141-35012:+ | gene-YFL049W_AKU4011 | rna-NM_001179918.1_AKU4011 | cds-NP_116605.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000182.1:34781-36652:- | gene-YFL049W_BG1 | rna-NM_001179918.1_BG1 | cds-NP_116605.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:31519-33390:+ | gene-YFL049W_Bruggeman | rna-NM_001179918.1_Bruggeman | cds-NP_116605.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:36907-38778:+ | gene-YFL049W_CAT1 | rna-NM_001179918.1_CAT1 | cds-NP_116605.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:33818-35689:+ | gene-YFL049W_CBS1585 | rna-NM_001179918.1_CBS1585 | cds-NP_116605.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:7452-9323:+ | gene-YFL049W_CBS436 | rna-NM_001179918.1_CBS436 | cds-NP_116605.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:34058-35929:+ | gene-YFL049W_CBS6412 | rna-NM_001179918.1_CBS6412 | cds-NP_116605.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:36219-38090:+ | gene-YFL049W_CBS6413 | rna-NM_001179918.1_CBS6413 | cds-NP_116605.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:33129-35000:+ | gene-YFL049W_CENPK1137D | rna-NM_001179918.1_CENPK1137D | cds-NP_116605.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:32485-34356:+ | gene-YFL049W_EthanolRed | rna-NM_001179918.1_EthanolRed | cds-NP_116605.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:33693-35564:+ | gene-YFL049W_FaliES1 | rna-NM_001179918.1_FaliES1 | cds-NP_116605.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000448.1:42149-44020:+ | gene-YFL049W_JAY291 | rna-NM_001179918.1_JAY291 | cds-NP_116605.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:34108-35979:+ | gene-YFL049W_MUCL30387 | rna-NM_001179918.1_MUCL30387 | cds-NP_116605.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:31132-33003:+ | gene-YFL049W_MUCL30388 | rna-NM_001179918.1_MUCL30388 | cds-NP_116605.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:32334-34205:+ | gene-YFL049W_MUCL39482 | rna-NM_001179918.1_MUCL39482 | cds-NP_116605.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:30037-31908:+ | gene-YFL049W_MUCL42920 | rna-NM_001179918.1_MUCL42920 | cds-NP_116605.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:36802-38673:+ | gene-YFL049W_NCIM3186 | rna-NM_001179918.1_NCIM3186 | cds-NP_116605.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:33411-35282:+ | gene-YFL049W_NCYC1407 | rna-NM_001179918.1_NCYC1407 | cds-NP_116605.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:53303-55174:+ | gene-YFL049W_PE2H3 | rna-NM_001179918.1_PE2H3 | cds-NP_116605.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:52854-54725:+ | gene-YFL049W_PE2H4 | rna-NM_001179918.1_PE2H4 | cds-NP_116605.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:36803-38674:+ | gene-YFL049W_S288C | rna-NM_001179918.1_S288C | cds-NP_116605.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:296958-298829:- | gene-YFL049W_SA1 | rna-NM_001179918.1_SA1 | cds-NP_116605.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:32881-34752:+ | gene-YFL049W_ThermosaccDry | rna-NM_001179918.1_ThermosaccDry | cds-NP_116605.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:41175-43046:+ | gene-YFL049W_VR1 | rna-NM_001179918.1_VR1 | cds-NP_116605.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000012.1:18177-20048:+ | gene-YFL049W_ZTW1 | rna-NM_001179918.1_ZTW1 | cds-NP_116605.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:57178-59049:+ | gene-YFL049W_Sparadoxus | rna-NM_001179918.1_Sparadoxus | cds-NP_116605.1_Sparadoxus | 87.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |