Gene name: SWM2
Reference locus (S288C): YNR004W
Gene biotype: protein_coding
Description: Nucleolar protein SWM2; Protein with a role in snRNA and snoRNA cap trimethylation; interacts with Tgs1p and shows similar phenotypes; required for trimethylation of the caps of spliceosomal snRNAs and the U3 snoRNA, and for efficient 3' end processing of U3 snoRNA; may act as a specificity factor for Tgs1p; Belongs to the SWM2 family
Top 10 interactors (score): TGS1 (0.967); MUD2 (0.844); PRP42 (0.816); YGL140C (0.777); CMG1 (0.766); YDL183C (0.744); PXR1 (0.718); FLC3 (0.698); MUD1 (0.69); SNU56 (0.633); CWC21 (0.623); SPP2 (0.616); LUC7 (0.468); SNU66 (0.461); PRP43 (0.456); SQS1 (0.453); PHO91 (0.451); SPP382 (0.45); PRP39 (0.445); NAB2 (0.426)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:619525-619965:+ | gene-YNR004W_AKU4011 | rna-NM_001183181.1_AKU4011 | cds-NP_014401.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:527381-527821:+ | gene-YNR004W_BG1 | rna-NM_001183181.1_BG1 | cds-NP_014401.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:637018-637458:+ | gene-YNR004W_Bruggeman | rna-NM_001183181.1_Bruggeman | cds-NP_014401.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:671244-671684:+ | gene-YNR004W_CAT1 | rna-NM_001183181.1_CAT1 | cds-NP_014401.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:625321-625761:+ | gene-YNR004W_CBS1585 | rna-NM_001183181.1_CBS1585 | cds-NP_014401.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:687017-687457:+ | gene-YNR004W_CBS436 | rna-NM_001183181.1_CBS436 | cds-NP_014401.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:614887-615327:+ | gene-YNR004W_CBS6412 | rna-NM_001183181.1_CBS6412 | cds-NP_014401.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:616215-616655:+ | gene-YNR004W_CBS6413 | rna-NM_001183181.1_CBS6413 | cds-NP_014401.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:629629-630069:+ | gene-YNR004W_CENPK1137D | rna-NM_001183181.1_CENPK1137D | cds-NP_014401.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:621446-621886:+ | gene-YNR004W_EthanolRed | rna-NM_001183181.1_EthanolRed | cds-NP_014401.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:612464-612904:+ | gene-YNR004W_FaliES1 | rna-NM_001183181.1_FaliES1 | cds-NP_014401.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000037.1:89838-90278:- | gene-YNR004W_JAY291 | rna-NM_001183181.1_JAY291 | cds-NP_014401.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:634770-635210:+ | gene-YNR004W_MUCL30387 | rna-NM_001183181.1_MUCL30387 | cds-NP_014401.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:675604-676044:+ | gene-YNR004W_MUCL30388 | rna-NM_001183181.1_MUCL30388 | cds-NP_014401.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:616829-617269:+ | gene-YNR004W_MUCL39482 | rna-NM_001183181.1_MUCL39482 | cds-NP_014401.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:621013-621453:+ | gene-YNR004W_MUCL42920 | rna-NM_001183181.1_MUCL42920 | cds-NP_014401.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:635912-636352:+ | gene-YNR004W_NCIM3186 | rna-NM_001183181.1_NCIM3186 | cds-NP_014401.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:619331-619771:+ | gene-YNR004W_NCYC1407 | rna-NM_001183181.1_NCYC1407 | cds-NP_014401.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:620422-620862:+ | gene-YNR004W_PE2H3 | rna-NM_001183181.1_PE2H3 | cds-NP_014401.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:621740-622180:+ | gene-YNR004W_PE2H4 | rna-NM_001183181.1_PE2H4 | cds-NP_014401.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:635943-636383:+ | gene-YNR004W_S288C | rna-NM_001183181.1_S288C | cds-NP_014401.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000068.1:33647-34087:+ | gene-YNR004W_SA1 | rna-NM_001183181.1_SA1 | cds-NP_014401.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:612804-613244:+ | gene-YNR004W_ThermosaccDry | rna-NM_001183181.1_ThermosaccDry | cds-NP_014401.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:654767-655207:+ | gene-YNR004W_VR1 | rna-NM_001183181.1_VR1 | cds-NP_014401.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:521711-522151:+ | gene-YNR004W_ZTW1 | rna-NM_001183181.1_ZTW1 | cds-NP_014401.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:626824-627264:+ | gene-YNR004W_Sparadoxus | rna-NM_001183181.1_Sparadoxus | cds-NP_014401.1_Sparadoxus | 87.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |