Gene name: SWI4
Reference locus (S288C): YER111C
Gene biotype: protein_coding
Description: Regulatory protein SWI4; DNA binding component of the SBF complex (Swi4p-Swi6p); a transcriptional activator that in concert with MBF (Mbp1-Swi6p) regulates late G1-specific transcription of targets including cyclins and genes required for DNA synthesis and repair; Slt2p-independent regulator of cold growth; acetylation at two sites, K1016 and K1066, regulates interaction with Swi6p
Top 10 interactors (score): WHI5 (0.998); SLT2 (0.997); CLN3 (0.996); SWI6 (0.995); CDC28 (0.994); STB1 (0.992); RLM1 (0.977); MCM1 (0.975); MBP1 (0.973); CLN2 (0.968); CLB2 (0.966); PKC1 (0.965); CLB5 (0.959); BCK2 (0.954); FKH2 (0.951); SWI5 (0.948); BCK1 (0.939); FKH1 (0.926); MSA1 (0.917); KDX1 (0.915)
Homologues (species, bitscore): Pla2g6 (Mus musculus, 52.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:376469-379753:- | gene-YER111C_AKU4011 | rna-NM_001179001.1_AKU4011 | cds-NP_011036.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:45864-49145:+ | gene-YER111C_BG1 | rna-NM_001179001.1_BG1 | cds-NP_011036.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:386947-390228:- | gene-YER111C_Bruggeman | rna-NM_001179001.1_Bruggeman | cds-NP_011036.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:381481-384777:- | gene-YER111C_CAT1 | rna-NM_001179001.1_CAT1 | cds-NP_011036.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:375867-379148:- | gene-YER111C_CBS1585 | rna-NM_001179001.1_CBS1585 | cds-NP_011036.1_CBS1585 | 99.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:378576-381857:- | gene-YER111C_CBS436 | rna-NM_001179001.1_CBS436 | cds-NP_011036.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:374941-378228:- | gene-YER111C_CBS6412 | rna-NM_001179001.1_CBS6412 | cds-NP_011036.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:381785-385069:- | gene-YER111C_CBS6413 | rna-NM_001179001.1_CBS6413 | cds-NP_011036.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:380336-383620:- | gene-YER111C_CENPK1137D | rna-NM_001179001.1_CENPK1137D | cds-NP_011036.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:376315-379602:- | gene-YER111C_EthanolRed | rna-NM_001179001.1_EthanolRed | cds-NP_011036.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:376796-380083:- | gene-YER111C_FaliES1 | rna-NM_001179001.1_FaliES1 | cds-NP_011036.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000174.1:11458-14739:+ | gene-YER111C_JAY291 | rna-NM_001179001.1_JAY291 | cds-NP_011036.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:383893-387177:- | gene-YER111C_MUCL30387 | rna-NM_001179001.1_MUCL30387 | cds-NP_011036.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:378838-382122:- | gene-YER111C_MUCL30388 | rna-NM_001179001.1_MUCL30388 | cds-NP_011036.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:374892-378173:- | gene-YER111C_MUCL39482 | rna-NM_001179001.1_MUCL39482 | cds-NP_011036.1_MUCL39482 | 99.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:383385-386669:- | gene-YER111C_MUCL42920 | rna-NM_001179001.1_MUCL42920 | cds-NP_011036.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:382594-385875:- | gene-YER111C_NCIM3186 | rna-NM_001179001.1_NCIM3186 | cds-NP_011036.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:380425-383706:- | gene-YER111C_NCYC1407 | rna-NM_001179001.1_NCYC1407 | cds-NP_011036.1_NCYC1407 | 99.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:390973-394254:- | gene-YER111C_PE2H3 | rna-NM_001179001.1_PE2H3 | cds-NP_011036.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:380914-384195:- | gene-YER111C_PE2H4 | rna-NM_001179001.1_PE2H4 | cds-NP_011036.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:382595-385876:- | gene-YER111C_S288C | rna-NM_001179001.1_S288C | cds-NP_011036.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:92205-95486:- | gene-YER111C_SA1 | rna-NM_001179001.1_SA1 | cds-NP_011036.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:377594-380881:- | gene-YER111C_ThermosaccDry | rna-NM_001179001.1_ThermosaccDry | cds-NP_011036.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:378660-381941:- | gene-YER111C_VR1 | rna-NM_001179001.1_VR1 | cds-NP_011036.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:374717-377998:- | gene-YER111C_ZTW1 | rna-NM_001179001.1_ZTW1 | cds-NP_011036.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:378690-381938:- | gene-YER111C_Sparadoxus | rna-NM_001179001.1_Sparadoxus | cds-NP_011036.1_Sparadoxus | 88.8 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |