Gene name: SWI3
Reference locus (S288C): YJL176C
Gene biotype: protein_coding
Description: Subunit of the SWI/SNF chromatin remodeling complex; SWI/SNF regulates transcription by remodeling chromosomes; contains SANT domain that is required for SWI/SNF assembly; is essential for displacement of histone H2A-H2B dimers during ATP-dependent remodeling; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2; relocates to the cytosol under hypoxic conditions
Top 10 interactors (score): SNF5 (0.999); ARP9 (0.999); SNF6 (0.999); ARP7 (0.999); SWI1 (0.999); SWP82 (0.999); SNF12 (0.999); SNF2 (0.999); RTT102 (0.996); TAF14 (0.994); ARP4 (0.993); SNF11 (0.993); STH1 (0.984); RSC6 (0.972); RSC1 (0.963); RSC2 (0.952); SFH1 (0.91); GCN5 (0.902); HHT1 (0.863); HHT2 (0.86)
Homologues (species, bitscore): SMARCC2 (Homo sapiens, 236.1); Smarcc2 (Mus musculus, 233.4); smarcc1a (Danio rerio, 235.7); smarcc2 (Xenopus tropicalis, 242.3); mor (Drosophila melanogaster, 236.5); swsn-1 (Caenorhabditis elegans, 250.8); SWI3B (Arabidopsis thaliana, 149.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:80447-82924:- | gene-YJL176C_AKU4011 | rna-NM_001181609.1_AKU4011 | cds-NP_012359.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:57782-60259:- | gene-YJL176C_BG1 | rna-NM_001181609.1_BG1 | cds-NP_012359.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:92278-94755:- | gene-YJL176C_Bruggeman | rna-NM_001181609.1_Bruggeman | cds-NP_012359.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:95747-98224:- | gene-YJL176C_CAT1 | rna-NM_001181609.1_CAT1 | cds-NP_012359.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:86082-88559:- | gene-YJL176C_CBS1585 | rna-NM_001181609.1_CBS1585 | cds-NP_012359.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:110843-113320:- | gene-YJL176C_CBS436 | rna-NM_001181609.1_CBS436 | cds-NP_012359.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:82564-85041:- | gene-YJL176C_CBS6412 | rna-NM_001181609.1_CBS6412 | cds-NP_012359.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:83557-86034:- | gene-YJL176C_CBS6413 | rna-NM_001181609.1_CBS6413 | cds-NP_012359.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:74529-77006:- | gene-YJL176C_CENPK1137D | rna-NM_001181609.1_CENPK1137D | cds-NP_012359.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:84743-87220:- | gene-YJL176C_EthanolRed | rna-NM_001181609.1_EthanolRed | cds-NP_012359.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:90020-92497:- | gene-YJL176C_FaliES1 | rna-NM_001181609.1_FaliES1 | cds-NP_012359.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000164.1:26228-28705:+ | gene-YJL176C_JAY291 | rna-NM_001181609.1_JAY291 | cds-NP_012359.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:94006-96483:- | gene-YJL176C_MUCL30387 | rna-NM_001181609.1_MUCL30387 | cds-NP_012359.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:90167-92644:- | gene-YJL176C_MUCL30388 | rna-NM_001181609.1_MUCL30388 | cds-NP_012359.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:84823-87300:- | gene-YJL176C_MUCL39482 | rna-NM_001181609.1_MUCL39482 | cds-NP_012359.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:89435-91912:- | gene-YJL176C_MUCL42920 | rna-NM_001181609.1_MUCL42920 | cds-NP_012359.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:92032-94509:- | gene-YJL176C_NCIM3186 | rna-NM_001181609.1_NCIM3186 | cds-NP_012359.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:83435-85912:- | gene-YJL176C_NCYC1407 | rna-NM_001181609.1_NCYC1407 | cds-NP_012359.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:96148-98625:- | gene-YJL176C_PE2H3 | rna-NM_001181609.1_PE2H3 | cds-NP_012359.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:95787-98264:- | gene-YJL176C_PE2H4 | rna-NM_001181609.1_PE2H4 | cds-NP_012359.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:92053-94530:- | gene-YJL176C_S288C | rna-NM_001181609.1_S288C | cds-NP_012359.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:59340-61817:+ | gene-YJL176C_SA1 | rna-NM_001181609.1_SA1 | cds-NP_012359.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:83214-85691:- | gene-YJL176C_ThermosaccDry | rna-NM_001181609.1_ThermosaccDry | cds-NP_012359.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:90099-92576:- | gene-YJL176C_VR1 | rna-NM_001181609.1_VR1 | cds-NP_012359.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:70798-73275:- | gene-YJL176C_ZTW1 | rna-NM_001181609.1_ZTW1 | cds-NP_012359.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:95200-97659:- | gene-YJL176C_Sparadoxus | rna-NM_001181609.1_Sparadoxus | cds-NP_012359.1_Sparadoxus | 87.5 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |