SWF1 (YDR126W)


Gene profile

Gene name: SWF1
Reference locus (S288C): YDR126W
Gene biotype: protein_coding

Description: Palmitoyltransferase that acts on transmembrane proteins; including the SNAREs Snc1p, Syn8p, Tlg1p and likely all SNAREs; contains an Asp-His-His-Cys-cysteine rich (DHHC-CRD) domain; may have a role in vacuole fusion

Top 10 interactors (score): AKR1 (0.974); AKR2 (0.973); PFA5 (0.923); SHR5 (0.918); VAC8 (0.908); NCP1 (0.901); TLG1 (0.813); YPK9 (0.757); RAS2 (0.728); YPL199C (0.701); FBP26 (0.695); SNA4 (0.674); TUL1 (0.663); LAS21 (0.652); SYN8 (0.65); LEA1 (0.631); YCK2 (0.622); TPI1 (0.622); ANR2 (0.613); CDC42 (0.598)

Homologues (species, bitscore): ZDHHC5 (Homo sapiens, 94.7); Zdhhc5 (Mus musculus, 94.7); zdhhc5a (Danio rerio, 94.4); zdhhc5 (Xenopus tropicalis, 94.0); CG34449 (Drosophila melanogaster, 90.9); dhhc-8 (Caenorhabditis elegans, 89.7); AT3G04970 (Arabidopsis thaliana, 88.2)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005298.1:674169-675179:+ gene-YDR126W_AKU4011 rna-NM_001180434.1_AKU4011 cds-NP_010411.1_AKU4011 99.2 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000080.1:449688-450698:- gene-YDR126W_BG1 rna-NM_001180434.1_BG1 cds-NP_010411.1_BG1 99.9 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005506.1:706229-707239:+ gene-YDR126W_Bruggeman rna-NM_001180434.1_Bruggeman cds-NP_010411.1_Bruggeman 99.2 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005522.1:692981-693991:+ gene-YDR126W_CAT1 rna-NM_001180434.1_CAT1 cds-NP_010411.1_CAT1 99.4 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005362.1:665207-666217:+ gene-YDR126W_CBS1585 rna-NM_001180434.1_CBS1585 cds-NP_010411.1_CBS1585 99.1 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005346.1:691097-692107:+ gene-YDR126W_CBS436 rna-NM_001180434.1_CBS436 cds-NP_010411.1_CBS436 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005330.1:661559-662569:+ gene-YDR126W_CBS6412 rna-NM_001180434.1_CBS6412 cds-NP_010411.1_CBS6412 99.2 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005314.1:690535-691545:+ gene-YDR126W_CBS6413 rna-NM_001180434.1_CBS6413 cds-NP_010411.1_CBS6413 99.2 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001525.1:695674-696684:+ gene-YDR126W_CENPK1137D rna-NM_001180434.1_CENPK1137D cds-NP_010411.1_CENPK1137D 99.1 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005474.1:675932-676942:+ gene-YDR126W_EthanolRed rna-NM_001180434.1_EthanolRed cds-NP_010411.1_EthanolRed 99.2 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005538.1:682726-683736:+ gene-YDR126W_FaliES1 rna-NM_001180434.1_FaliES1 cds-NP_010411.1_FaliES1 99.2 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000002.1:34857-35867:+ gene-YDR126W_JAY291 rna-NM_001180434.1_JAY291 cds-NP_010411.1_JAY291 98.8 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005410.1:692153-693163:+ gene-YDR126W_MUCL30387 rna-NM_001180434.1_MUCL30387 cds-NP_010411.1_MUCL30387 99.2 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005442.1:681172-682182:+ gene-YDR126W_MUCL30388 rna-NM_001180434.1_MUCL30388 cds-NP_010411.1_MUCL30388 99.2 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005282.1:666550-667560:+ gene-YDR126W_MUCL39482 rna-NM_001180434.1_MUCL39482 cds-NP_010411.1_MUCL39482 99.2 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005426.1:604499-605509:+ gene-YDR126W_MUCL42920 rna-NM_001180434.1_MUCL42920 cds-NP_010411.1_MUCL42920 99.2 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:703157-704167:+ gene-YDR126W_NCIM3186 rna-NM_001180434.1_NCIM3186 cds-NP_010411.1_NCIM3186 99.0 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005266.1:665953-666963:+ gene-YDR126W_NCYC1407 rna-NM_001180434.1_NCYC1407 cds-NP_010411.1_NCYC1407 99.2 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:685285-686295:+ gene-YDR126W_PE2H3 rna-NM_001180434.1_PE2H3 cds-NP_010411.1_PE2H3 99.9 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:684590-685600:+ gene-YDR126W_PE2H4 rna-NM_001180434.1_PE2H4 cds-NP_010411.1_PE2H4 99.9 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:703234-704244:+ gene-YDR126W_S288C rna-NM_001180434.1_S288C cds-NP_010411.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000009.1:51901-52911:+ gene-YDR126W_SA1 rna-NM_001180434.1_SA1 cds-NP_010411.1_SA1 99.7 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005490.1:682248-683258:+ gene-YDR126W_ThermosaccDry rna-NM_001180434.1_ThermosaccDry cds-NP_010411.1_ThermosaccDry 99.2 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005458.1:695599-696609:+ gene-YDR126W_VR1 rna-NM_001180434.1_VR1 cds-NP_010411.1_VR1 99.9 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000006.1:679834-680844:+ gene-YDR126W_ZTW1 rna-NM_001180434.1_ZTW1 cds-NP_010411.1_ZTW1 99.2 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:684325-685335:+ gene-YDR126W_Sparadoxus rna-NM_001180434.1_Sparadoxus cds-NP_010411.1_Sparadoxus 88.9 99.9 Verified 1 1 1 False True False False False

Additional files