Gene name: SWD1
Reference locus (S288C): YAR003W
Gene biotype: protein_coding
Description: COMPASS component SWD1; Subunit of the COMPASS (Set1C) complex; COMPASS methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; WD40 beta propeller superfamily member with similarity to mammalian Rbbp7
Top 10 interactors (score): BRE2 (0.999); SET1 (0.999); SPP1 (0.999); SDC1 (0.999); SWD3 (0.999); SWD2 (0.999); CYC8 (0.996); UBI4 (0.992); RPS31 (0.992); JHD2 (0.99); SHG1 (0.99); RTT107 (0.984); ECM5 (0.981); RPL40B (0.971); RPL40A (0.969); BRE1 (0.941); SET2 (0.936); HHT1 (0.916); SWA2 (0.913); TAH1 (0.913)
Homologues (species, bitscore): RBBP5 (Homo sapiens, 143.7); Rbbp5 (Mus musculus, 143.3); rbbp5 (Danio rerio, 140.6); rbbp5 (Xenopus tropicalis, 146.0); Rbbp5 (Drosophila melanogaster, 144.1); F21H12.1 (Caenorhabditis elegans, 153.7); AT3G21060 (Arabidopsis thaliana, 166.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:140434-141714:+ | gene-YAR003W_AKU4011 | rna-NM_001178210.1_AKU4011 | cds-NP_009403.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000103.1:2894-4174:+ | gene-YAR003W_BG1 | rna-NM_001178210.1_BG1 | cds-NP_009403.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:155220-156500:+ | gene-YAR003W_Bruggeman | rna-NM_001178210.1_Bruggeman | cds-NP_009403.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:141822-143102:+ | gene-YAR003W_CAT1 | rna-NM_001178210.1_CAT1 | cds-NP_009403.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:153132-154412:+ | gene-YAR003W_CBS1585 | rna-NM_001178210.1_CBS1585 | cds-NP_009403.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:153445-154725:+ | gene-YAR003W_CBS436 | rna-NM_001178210.1_CBS436 | cds-NP_009403.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:765876-767156:+ | gene-YAR003W_CBS6412 | rna-NM_001178210.1_CBS6412 | cds-NP_009403.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:151400-152680:+ | gene-YAR003W_CBS6413 | rna-NM_001178210.1_CBS6413 | cds-NP_009403.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:154911-156191:+ | gene-YAR003W_CENPK1137D | rna-NM_001178210.1_CENPK1137D | cds-NP_009403.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:140990-142270:+ | gene-YAR003W_EthanolRed | rna-NM_001178210.1_EthanolRed | cds-NP_009403.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:156651-157931:+ | gene-YAR003W_FaliES1 | rna-NM_001178210.1_FaliES1 | cds-NP_009403.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000248.1:14021-15301:+ | gene-YAR003W_JAY291 | rna-NM_001178210.1_JAY291 | cds-NP_009403.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:156134-157414:+ | gene-YAR003W_MUCL30387 | rna-NM_001178210.1_MUCL30387 | cds-NP_009403.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:153639-154919:+ | gene-YAR003W_MUCL30388 | rna-NM_001178210.1_MUCL30388 | cds-NP_009403.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:152388-153668:+ | gene-YAR003W_MUCL39482 | rna-NM_001178210.1_MUCL39482 | cds-NP_009403.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:154538-155818:+ | gene-YAR003W_MUCL42920 | rna-NM_001178210.1_MUCL42920 | cds-NP_009403.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:154882-156162:+ | gene-YAR003W_NCIM3186 | rna-NM_001178210.1_NCIM3186 | cds-NP_009403.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:139798-141078:+ | gene-YAR003W_NCYC1407 | rna-NM_001178210.1_NCYC1407 | cds-NP_009403.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:141720-143000:+ | gene-YAR003W_PE2H3 | rna-NM_001178210.1_PE2H3 | cds-NP_009403.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:141439-142719:+ | gene-YAR003W_PE2H4 | rna-NM_001178210.1_PE2H4 | cds-NP_009403.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:155005-156285:+ | gene-YAR003W_S288C | rna-NM_001178210.1_S288C | cds-NP_009403.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000100.1:13737-15017:+ | gene-YAR003W_SA1 | rna-NM_001178210.1_SA1 | cds-NP_009403.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:155656-156936:+ | gene-YAR003W_ThermosaccDry | rna-NM_001178210.1_ThermosaccDry | cds-NP_009403.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:160210-161490:+ | gene-YAR003W_VR1 | rna-NM_001178210.1_VR1 | cds-NP_009403.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:127479-128759:+ | gene-YAR003W_ZTW1 | rna-NM_001178210.1_ZTW1 | cds-NP_009403.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:145043-146323:+ | gene-YAR003W_Sparadoxus | rna-NM_001178210.1_Sparadoxus | cds-NP_009403.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |