Gene name: SWC5
Reference locus (S288C): YBR231C
Gene biotype: protein_coding
Description: SWR1-complex protein 5; Component of the SWR1 complex; complex exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia; Belongs to the SWC5 family
Top 10 interactors (score): VPS72 (0.999); SWC4 (0.999); SWR1 (0.999); YAF9 (0.999); VPS71 (0.998); RVB1 (0.997); SWC3 (0.997); SWC7 (0.995); RVB2 (0.994); ARP6 (0.992); BDF1 (0.991); ACT1 (0.989); HTZ1 (0.987); ARP4 (0.97); TAF14 (0.938); IES3 (0.928); INO80 (0.917); IES4 (0.913); IES1 (0.913); NHP10 (0.911)
Homologues (species, bitscore): CFDP1 (Homo sapiens, 65.9); Cfdp1 (Mus musculus, 69.3); rltpr (Danio rerio, 76.3); CFDP1 (Xenopus tropicalis, 65.5); Yeti (Drosophila melanogaster, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:666486-667397:- | gene-YBR231C_AKU4011 | rna-NM_001178579.3_AKU4011 | cds-NP_009790.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:37449-38360:- | gene-YBR231C_BG1 | rna-NM_001178579.3_BG1 | cds-NP_009790.3_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:667641-668552:- | gene-YBR231C_Bruggeman | rna-NM_001178579.3_Bruggeman | cds-NP_009790.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:670847-671758:- | gene-YBR231C_CAT1 | rna-NM_001178579.3_CAT1 | cds-NP_009790.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:658018-658929:- | gene-YBR231C_CBS1585 | rna-NM_001178579.3_CBS1585 | cds-NP_009790.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:664444-665355:- | gene-YBR231C_CBS436 | rna-NM_001178579.3_CBS436 | cds-NP_009790.3_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:752998-753909:- | gene-YBR231C_CBS6412 | rna-NM_001178579.3_CBS6412 | cds-NP_009790.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:664061-664972:- | gene-YBR231C_CBS6413 | rna-NM_001178579.3_CBS6413 | cds-NP_009790.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:675956-676867:- | gene-YBR231C_CENPK1137D | rna-NM_001178579.3_CENPK1137D | cds-NP_009790.3_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:789727-790638:- | gene-YBR231C_EthanolRed | rna-NM_001178579.3_EthanolRed | cds-NP_009790.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:682834-683745:- | gene-YBR231C_FaliES1 | rna-NM_001178579.3_FaliES1 | cds-NP_009790.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:118605-119516:+ | gene-YBR231C_JAY291 | rna-NM_001178579.3_JAY291 | cds-NP_009790.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:669657-670568:- | gene-YBR231C_MUCL30387 | rna-NM_001178579.3_MUCL30387 | cds-NP_009790.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:686736-687647:- | gene-YBR231C_MUCL30388 | rna-NM_001178579.3_MUCL30388 | cds-NP_009790.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:656370-657281:- | gene-YBR231C_MUCL39482 | rna-NM_001178579.3_MUCL39482 | cds-NP_009790.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:666216-667127:- | gene-YBR231C_MUCL42920 | rna-NM_001178579.3_MUCL42920 | cds-NP_009790.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:681976-682887:- | gene-YBR231C_NCIM3186 | rna-NM_001178579.3_NCIM3186 | cds-NP_009790.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:658234-659145:- | gene-YBR231C_NCYC1407 | rna-NM_001178579.3_NCYC1407 | cds-NP_009790.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:681349-682260:- | gene-YBR231C_PE2H3 | rna-NM_001178579.3_PE2H3 | cds-NP_009790.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:679025-679936:- | gene-YBR231C_PE2H4 | rna-NM_001178579.3_PE2H4 | cds-NP_009790.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:682179-683090:- | gene-YBR231C_S288C | rna-NM_001178579.3_S288C | cds-NP_009790.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:37306-38217:- | gene-YBR231C_SA1 | rna-NM_001178579.3_SA1 | cds-NP_009790.3_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:681844-682755:- | gene-YBR231C_ThermosaccDry | rna-NM_001178579.3_ThermosaccDry | cds-NP_009790.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:662022-662933:- | gene-YBR231C_VR1 | rna-NM_001178579.3_VR1 | cds-NP_009790.3_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:654707-655618:- | gene-YBR231C_ZTW1 | rna-NM_001178579.3_ZTW1 | cds-NP_009790.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:698704-699621:- | gene-YBR231C_Sparadoxus | rna-NM_001178579.3_Sparadoxus | cds-NP_009790.3_Sparadoxus | 84.3 | 99.5 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |