Gene name: SWC4
Reference locus (S288C): YGR002C
Gene biotype: protein_coding
Description: SWR1-complex protein 4; Component of the Swr1p complex that incorporates Htz1p into chromatin; component of the NuA4 histone acetyltransferase complex
Top 10 interactors (score): TRA1 (0.999); VPS71 (0.999); EAF3 (0.999); VPS72 (0.999); RVB2 (0.999); SWR1 (0.999); YAF9 (0.999); SWC5 (0.999); RVB1 (0.999); ARP4 (0.999); ARP6 (0.999); EPL1 (0.999); EAF7 (0.999); EAF6 (0.999); ESA1 (0.998); YNG2 (0.998); TAF14 (0.998); SAS5 (0.998); BDF1 (0.997); SWC7 (0.997)
Homologues (species, bitscore): DMAP1 (Homo sapiens, 105.1); Dmap1 (Mus musculus, 105.9); dmap1 (Danio rerio, 112.5); dmap1 (Xenopus tropicalis, 103.2); DMAP1 (Drosophila melanogaster, 98.2); ekl-4 (Caenorhabditis elegans, 117.9); AT2G47210 (Arabidopsis thaliana, 86.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:500523-501953:- | gene-YGR002C_AKU4011 | rna-NM_001181131.1_AKU4011 | cds-NP_011516.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:74156-75586:+ | gene-YGR002C_BG1 | rna-NM_001181131.1_BG1 | cds-NP_011516.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:501492-502922:- | gene-YGR002C_Bruggeman | rna-NM_001181131.1_Bruggeman | cds-NP_011516.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:500286-501716:- | gene-YGR002C_CAT1 | rna-NM_001181131.1_CAT1 | cds-NP_011516.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:502016-503446:- | gene-YGR002C_CBS1585 | rna-NM_001181131.1_CBS1585 | cds-NP_011516.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:496379-497809:- | gene-YGR002C_CBS436 | rna-NM_001181131.1_CBS436 | cds-NP_011516.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:494612-496042:- | gene-YGR002C_CBS6412 | rna-NM_001181131.1_CBS6412 | cds-NP_011516.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:498689-500119:- | gene-YGR002C_CBS6413 | rna-NM_001181131.1_CBS6413 | cds-NP_011516.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:498294-499724:- | gene-YGR002C_CENPK1137D | rna-NM_001181131.1_CENPK1137D | cds-NP_011516.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:488894-490324:- | gene-YGR002C_EthanolRed | rna-NM_001181131.1_EthanolRed | cds-NP_011516.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:492144-493574:- | gene-YGR002C_FaliES1 | rna-NM_001181131.1_FaliES1 | cds-NP_011516.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000020.1:30778-32208:- | gene-YGR002C_JAY291 | rna-NM_001181131.1_JAY291 | cds-NP_011516.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:498714-500144:- | gene-YGR002C_MUCL30387 | rna-NM_001181131.1_MUCL30387 | cds-NP_011516.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:501265-502695:- | gene-YGR002C_MUCL30388 | rna-NM_001181131.1_MUCL30388 | cds-NP_011516.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:497835-499265:- | gene-YGR002C_MUCL39482 | rna-NM_001181131.1_MUCL39482 | cds-NP_011516.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:507266-508696:- | gene-YGR002C_MUCL42920 | rna-NM_001181131.1_MUCL42920 | cds-NP_011516.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:498476-499906:- | gene-YGR002C_NCIM3186 | rna-NM_001181131.1_NCIM3186 | cds-NP_011516.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:491876-493306:- | gene-YGR002C_NCYC1407 | rna-NM_001181131.1_NCYC1407 | cds-NP_011516.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:494546-495976:- | gene-YGR002C_PE2H3 | rna-NM_001181131.1_PE2H3 | cds-NP_011516.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:499596-501026:- | gene-YGR002C_PE2H4 | rna-NM_001181131.1_PE2H4 | cds-NP_011516.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:498476-499906:- | gene-YGR002C_S288C | rna-NM_001181131.1_S288C | cds-NP_011516.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:55681-57111:+ | gene-YGR002C_SA1 | rna-NM_001181131.1_SA1 | cds-NP_011516.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:511470-512900:- | gene-YGR002C_ThermosaccDry | rna-NM_001181131.1_ThermosaccDry | cds-NP_011516.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:601762-603192:- | gene-YGR002C_VR1 | rna-NM_001181131.1_VR1 | cds-NP_011516.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:490068-491498:- | gene-YGR002C_ZTW1 | rna-NM_001181131.1_ZTW1 | cds-NP_011516.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:499564-500991:- | gene-YGR002C_Sparadoxus | rna-NM_001181131.1_Sparadoxus | cds-NP_011516.1_Sparadoxus | 89.9 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |