Gene name: SWC3
Reference locus (S288C): YAL011W
Gene biotype: protein_coding
Description: SWR1-complex protein 3; Protein of unknown function; component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae; Belongs to the SWC3 family
Top 10 interactors (score): SWC5 (0.997); VPS72 (0.996); VPS71 (0.996); SWR1 (0.991); ARP6 (0.99); RVB1 (0.988); YAF9 (0.985); RVB2 (0.98); SWC7 (0.979); SWC4 (0.978); ACT1 (0.978); ARP4 (0.976); BDF1 (0.956); HTZ1 (0.952); TAF14 (0.932); IES3 (0.925); IES4 (0.906); INO80 (0.901); IES1 (0.9); ARP5 (0.9)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:117311-119188:+ | gene-YAL011W_AKU4011 | rna-NM_001178156.1_AKU4011 | cds-NP_009391.2_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:104261-106138:+ | gene-YAL011W_BG1 | rna-NM_001178156.1_BG1 | cds-NP_009391.2_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:132184-134061:+ | gene-YAL011W_Bruggeman | rna-NM_001178156.1_Bruggeman | cds-NP_009391.2_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:118520-120397:+ | gene-YAL011W_CAT1 | rna-NM_001178156.1_CAT1 | cds-NP_009391.2_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:130323-132200:+ | gene-YAL011W_CBS1585 | rna-NM_001178156.1_CBS1585 | cds-NP_009391.2_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:130601-132478:+ | gene-YAL011W_CBS436 | rna-NM_001178156.1_CBS436 | cds-NP_009391.2_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:743417-745294:+ | gene-YAL011W_CBS6412 | rna-NM_001178156.1_CBS6412 | cds-NP_009391.2_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:128593-130470:+ | gene-YAL011W_CBS6413 | rna-NM_001178156.1_CBS6413 | cds-NP_009391.2_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:132359-134236:+ | gene-YAL011W_CENPK1137D | rna-NM_001178156.1_CENPK1137D | cds-NP_009391.2_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:118730-120607:+ | gene-YAL011W_EthanolRed | rna-NM_001178156.1_EthanolRed | cds-NP_009391.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:133357-135234:+ | gene-YAL011W_FaliES1 | rna-NM_001178156.1_FaliES1 | cds-NP_009391.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:104628-106505:+ | gene-YAL011W_JAY291 | rna-NM_001178156.1_JAY291 | cds-NP_009391.2_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:133337-135214:+ | gene-YAL011W_MUCL30387 | rna-NM_001178156.1_MUCL30387 | cds-NP_009391.2_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:130584-132461:+ | gene-YAL011W_MUCL30388 | rna-NM_001178156.1_MUCL30388 | cds-NP_009391.2_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:129105-130982:+ | gene-YAL011W_MUCL39482 | rna-NM_001178156.1_MUCL39482 | cds-NP_009391.2_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:131486-133363:+ | gene-YAL011W_MUCL42920 | rna-NM_001178156.1_MUCL42920 | cds-NP_009391.2_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:132076-133953:+ | gene-YAL011W_NCIM3186 | rna-NM_001178156.1_NCIM3186 | cds-NP_009391.2_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:116988-118865:+ | gene-YAL011W_NCYC1407 | rna-NM_001178156.1_NCYC1407 | cds-NP_009391.2_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:118916-120793:+ | gene-YAL011W_PE2H3 | rna-NM_001178156.1_PE2H3 | cds-NP_009391.2_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:118635-120512:+ | gene-YAL011W_PE2H4 | rna-NM_001178156.1_PE2H4 | cds-NP_009391.2_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:132199-134076:+ | gene-YAL011W_S288C | rna-NM_001178156.1_S288C | cds-NP_009391.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000077.1:49120-50997:+ | gene-YAL011W_SA1 | rna-NM_001178156.1_SA1 | cds-NP_009391.2_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:132849-134726:+ | gene-YAL011W_ThermosaccDry | rna-NM_001178156.1_ThermosaccDry | cds-NP_009391.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:134159-136036:+ | gene-YAL011W_VR1 | rna-NM_001178156.1_VR1 | cds-NP_009391.2_VR1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:104677-106554:+ | gene-YAL011W_ZTW1 | rna-NM_001178156.1_ZTW1 | cds-NP_009391.2_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:122165-124072:+ | gene-YAL011W_Sparadoxus | rna-NM_001178156.1_Sparadoxus | cds-NP_009391.2_Sparadoxus | 87.1 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |