Gene name: SUV3
Reference locus (S288C): YPL029W
Gene biotype: protein_coding
Description: ATP-dependent RNA helicase; component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates RNA turnover; also required during splicing of the COX1 AI5_beta intron; expression of a processed form of human homolog SUPV3L1 carrying an N-terminal deletion of 46 amino acids rescues yeast suv3 null mutant
Top 10 interactors (score): DSS1 (0.999); DIS3 (0.982); MSS116 (0.971); RPO41 (0.951); PET127 (0.941); RRP46 (0.918); RRP6 (0.916); CSL4 (0.905); RRP4 (0.902); RRP42 (0.901); RRP40 (0.901); ATP6 (0.9); MTR3 (0.9); RRP45 (0.9); RRP43 (0.9); SKI6 (0.9); MSS18 (0.899); AI5_BETA (0.891); DHR2 (0.887); MDS3 (0.866)
Homologues (species, bitscore): SUPV3L1 (Homo sapiens, 304.7); Supv3l1 (Mus musculus, 294.7); supv3l1 (Danio rerio, 300.4); supv3l1 (Xenopus tropicalis, 271.6); CG9791 (Drosophila melanogaster, 293.9); C08F8.2 (Caenorhabditis elegans, 269.6); AT5G39840 (Arabidopsis thaliana, 332.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:466998-469211:+ | gene-YPL029W_AKU4011 | rna-NM_001183843.1_AKU4011 | cds-NP_015296.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:428169-430382:- | gene-YPL029W_BG1 | rna-NM_001183843.1_BG1 | cds-NP_015296.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:543958-546171:+ | gene-YPL029W_Bruggeman | rna-NM_001183843.1_Bruggeman | cds-NP_015296.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:583639-585852:+ | gene-YPL029W_CAT1 | rna-NM_001183843.1_CAT1 | cds-NP_015296.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:471068-473281:+ | gene-YPL029W_CBS1585 | rna-NM_001183843.1_CBS1585 | cds-NP_015296.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:485206-487419:+ | gene-YPL029W_CBS436 | rna-NM_001183843.1_CBS436 | cds-NP_015296.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:475260-477473:+ | gene-YPL029W_CBS6412 | rna-NM_001183843.1_CBS6412 | cds-NP_015296.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:467620-469833:+ | gene-YPL029W_CBS6413 | rna-NM_001183843.1_CBS6413 | cds-NP_015296.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:495474-497687:+ | gene-YPL029W_CENPK1137D | rna-NM_001183843.1_CENPK1137D | cds-NP_015296.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:465358-467571:+ | gene-YPL029W_EthanolRed | rna-NM_001183843.1_EthanolRed | cds-NP_015296.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:473188-475401:+ | gene-YPL029W_FaliES1 | rna-NM_001183843.1_FaliES1 | cds-NP_015296.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:81796-84009:+ | gene-YPL029W_JAY291 | rna-NM_001183843.1_JAY291 | cds-NP_015296.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:484907-487120:+ | gene-YPL029W_MUCL30387 | rna-NM_001183843.1_MUCL30387 | cds-NP_015296.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:484015-486228:+ | gene-YPL029W_MUCL30388 | rna-NM_001183843.1_MUCL30388 | cds-NP_015296.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:464384-466597:+ | gene-YPL029W_MUCL39482 | rna-NM_001183843.1_MUCL39482 | cds-NP_015296.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:523010-525223:+ | gene-YPL029W_MUCL42920 | rna-NM_001183843.1_MUCL42920 | cds-NP_015296.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:495489-497702:+ | gene-YPL029W_NCIM3186 | rna-NM_001183843.1_NCIM3186 | cds-NP_015296.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:471662-473875:+ | gene-YPL029W_NCYC1407 | rna-NM_001183843.1_NCYC1407 | cds-NP_015296.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:478308-480521:+ | gene-YPL029W_PE2H3 | rna-NM_001183843.1_PE2H3 | cds-NP_015296.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:477923-480136:+ | gene-YPL029W_PE2H4 | rna-NM_001183843.1_PE2H4 | cds-NP_015296.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:495506-497719:+ | gene-YPL029W_S288C | rna-NM_001183843.1_S288C | cds-NP_015296.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:38364-40577:+ | gene-YPL029W_SA1 | rna-NM_001183843.1_SA1 | cds-NP_015296.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:472987-475200:+ | gene-YPL029W_ThermosaccDry | rna-NM_001183843.1_ThermosaccDry | cds-NP_015296.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:487886-490099:+ | gene-YPL029W_VR1 | rna-NM_001183843.1_VR1 | cds-NP_015296.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:472279-474492:+ | gene-YPL029W_ZTW1 | rna-NM_001183843.1_ZTW1 | cds-NP_015296.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:472258-474471:+ | gene-YPL029W_Sparadoxus | rna-NM_001183843.1_Sparadoxus | cds-NP_015296.1_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |