Gene name: SUS1
Reference locus (S288C): YBR111W-A
Gene biotype: protein_coding
Description: Transcription and mRNA export factor SUS1; Component of both the SAGA histone acetylase and TREX-2 complexes; interacts with RNA polymerase II; involved in mRNA export coupled transcription activation and elongation; involved in post-transcriptional tethering of active genes to the nuclear periphery and to non-nascent mRNP
Top 10 interactors (score): CDC31 (0.999); SGF73 (0.999); UBP8 (0.999); SAC3 (0.999); SGF11 (0.999); TRA1 (0.998); ADA2 (0.998); SPT7 (0.998); NGG1 (0.996); SPT20 (0.996); THP1 (0.995); TAF6 (0.994); HFI1 (0.994); SPT3 (0.993); TAF12 (0.993); SPT8 (0.99); GCN5 (0.99); TAF9 (0.988); TAF5 (0.987); TAF10 (0.983)
Homologues (species, bitscore): ENY2 (Homo sapiens, 52.8); Eny2 (Mus musculus, 52.8); eny2 (Danio rerio, 55.1); eny2 (Xenopus tropicalis, 56.6); e(y)2 (Drosophila melanogaster, 50.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:444535-444975:+ | gene-YBR111W-A_AKU4011 | rna-NM_001184520.1_AKU4011 | cds-NP_878049.2_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:435580-436020:+ | gene-YBR111W-A_BG1 | rna-NM_001184520.1_BG1 | cds-NP_878049.2_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:446265-446705:+ | gene-YBR111W-A_Bruggeman | rna-NM_001184520.1_Bruggeman | cds-NP_878049.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:449058-449498:+ | gene-YBR111W-A_CAT1 | rna-NM_001184520.1_CAT1 | cds-NP_878049.2_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:436818-437258:+ | gene-YBR111W-A_CBS1585 | rna-NM_001184520.1_CBS1585 | cds-NP_878049.2_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:444913-445353:+ | gene-YBR111W-A_CBS436 | rna-NM_001184520.1_CBS436 | cds-NP_878049.2_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:535047-535487:+ | gene-YBR111W-A_CBS6412 | rna-NM_001184520.1_CBS6412 | cds-NP_878049.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:441959-442399:+ | gene-YBR111W-A_CBS6413 | rna-NM_001184520.1_CBS6413 | cds-NP_878049.2_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:454037-454477:+ | gene-YBR111W-A_CENPK1137D | rna-NM_001184520.1_CENPK1137D | cds-NP_878049.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:571291-571731:+ | gene-YBR111W-A_EthanolRed | rna-NM_001184520.1_EthanolRed | cds-NP_878049.2_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:460574-461014:+ | gene-YBR111W-A_FaliES1 | rna-NM_001184520.1_FaliES1 | cds-NP_878049.2_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000312.1:31507-31947:+ | gene-YBR111W-A_JAY291 | rna-NM_001184520.1_JAY291 | cds-NP_878049.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:448975-449415:+ | gene-YBR111W-A_MUCL30387 | rna-NM_001184520.1_MUCL30387 | cds-NP_878049.2_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:447319-447759:+ | gene-YBR111W-A_MUCL30388 | rna-NM_001184520.1_MUCL30388 | cds-NP_878049.2_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:434961-435401:+ | gene-YBR111W-A_MUCL39482 | rna-NM_001184520.1_MUCL39482 | cds-NP_878049.2_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:444617-445057:+ | gene-YBR111W-A_MUCL42920 | rna-NM_001184520.1_MUCL42920 | cds-NP_878049.2_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:461936-462376:+ | gene-YBR111W-A_NCIM3186 | rna-NM_001184520.1_NCIM3186 | cds-NP_878049.2_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:437742-438182:+ | gene-YBR111W-A_NCYC1407 | rna-NM_001184520.1_NCYC1407 | cds-NP_878049.2_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:450352-450792:+ | gene-YBR111W-A_PE2H3 | rna-NM_001184520.1_PE2H3 | cds-NP_878049.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:448028-448468:+ | gene-YBR111W-A_PE2H4 | rna-NM_001184520.1_PE2H4 | cds-NP_878049.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:462139-462579:+ | gene-YBR111W-A_S288C | rna-NM_001184520.1_S288C | cds-NP_878049.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:15126-15566:- | gene-YBR111W-A_SA1 | rna-NM_001184520.1_SA1 | cds-NP_878049.2_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:459581-460021:+ | gene-YBR111W-A_ThermosaccDry | rna-NM_001184520.1_ThermosaccDry | cds-NP_878049.2_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:441614-442054:+ | gene-YBR111W-A_VR1 | rna-NM_001184520.1_VR1 | cds-NP_878049.2_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:435254-435694:+ | gene-YBR111W-A_ZTW1 | rna-NM_001184520.1_ZTW1 | cds-NP_878049.2_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:472329-472769:+ | gene-YBR111W-A_Sparadoxus | rna-NM_001184520.1_Sparadoxus | cds-NP_878049.2_Sparadoxus | 94.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |