SUP56 (YNCA0005W)

Gene profile

Gene name: SUP56
Reference locus (S288C): YNCA0005W
Gene biotype: tRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005295.1:160640-160753:+ gene-YNCA0005W_AKU4011 rna-YNCA0005W_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000138.1:1349-1462:- gene-YNCA0005W_BG1 rna-YNCA0005W_BG1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005503.1:177282-177395:+ gene-YNCA0005W_Bruggeman rna-YNCA0005W_Bruggeman Unknown 98.7 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005521.1:85370-85483:+ gene-YNCA0005W_1_CAT1 Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005531.1:488865-488978:+ gene-YNCA0005W_2_CAT1 Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005519.1:164129-164242:+ gene-YNCA0005W_CAT1 rna-YNCA0005W_CAT1 Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005359.1:173339-173452:+ gene-YNCA0005W_CBS1585 rna-YNCA0005W_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005343.1:174004-174117:+ gene-YNCA0005W_CBS436 rna-YNCA0005W_CBS436 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:786081-786194:+ gene-YNCA0005W_CBS6412 rna-YNCA0005W_CBS6412 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005311.1:171604-171717:+ gene-YNCA0005W_CBS6413 rna-YNCA0005W_CBS6413 Unknown 100.0 100.0 Unannotated 2 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005313.1:85524-85637:+ gene-YNCA0005W_1_CBS6413 Unknown Unknown 100.0 100.0 Unannotated 2 2 0 Unknown Unknown non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001522.1:181054-181167:+ gene-YNCA0005W_CENPK1137D rna-YNCA0005W_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005471.1:161199-161312:+ gene-YNCA0005W_EthanolRed rna-YNCA0005W_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005535.1:177331-177444:+ gene-YNCA0005W_FaliES1 rna-YNCA0005W_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005407.1:180774-180887:+ gene-YNCA0005W_4_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 7 5 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005409.1:78335-78448:+ gene-YNCA0005W_2_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 7 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005410.1:1415795-1415909:- gene-YNCA0005W_6_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 7 7 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005413.1:423189-423302:+ gene-YNCA0005W_1_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 7 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000165.1:805-919:+ gene-YNCA0005W_5_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 7 6 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000356.1:270-383:- gene-YNCA0005W_3_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 7 4 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005407.1:179877-179990:+ gene-YNCA0005W_MUCL30387 rna-YNCA0005W_MUCL30387 Unknown 100.0 100.0 Unannotated 7 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005439.1:177051-177164:+ gene-YNCA0005W_MUCL30388 rna-YNCA0005W_MUCL30388 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005279.1:172592-172705:+ gene-YNCA0005W_MUCL39482 rna-YNCA0005W_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005425.1:81868-81981:+ gene-YNCA0005W_1_MUCL42920 Unknown Unknown 100.0 100.0 Unannotated 2 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005423.1:177037-177150:+ gene-YNCA0005W_MUCL42920 rna-YNCA0005W_MUCL42920 Unknown 100.0 100.0 Unannotated 2 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011810.1:181018-181131:+ gene-YNCA0005W_NCIM3186 rna-YNCA0005W_NCIM3186 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005263.1:160725-160838:+ gene-YNCA0005W_NCYC1407 rna-YNCA0005W_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994140.1:168528-168641:+ gene-YNCA0005W_PE2H3 rna-YNCA0005W_PE2H3 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999872.1:168247-168360:+ gene-YNCA0005W_PE2H4 rna-YNCA0005W_PE2H4 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001133.9:181141-181254:+ gene-YNCA0005W_S288C rna-YNCA0005W_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000081.1:49131-49244:- gene-YNCA0005W_SA1 rna-YNCA0005W_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005487.1:175867-175980:+ gene-YNCA0005W_ThermosaccDry rna-YNCA0005W_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005455.1:180671-180784:+ gene-YNCA0005W_2_VR1 Unknown Unknown 100.0 100.0 Unannotated 4 3 0 Unknown Unknown non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005455.1:185348-185461:+ gene-YNCA0005W_1_VR1 Unknown Unknown 100.0 100.0 Unannotated 4 2 0 Unknown Unknown non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005468.1:449991-450104:+ gene-YNCA0005W_3_VR1 Unknown Unknown 100.0 100.0 Unannotated 4 4 0 Unknown Unknown non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005457.1:97084-97197:+ gene-YNCA0005W_VR1 rna-YNCA0005W_VR1 Unknown 100.0 100.0 Unannotated 4 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000002.1:148020-148133:+ gene-YNCA0005W_ZTW1 rna-YNCA0005W_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047487.1:165834-165948:+ gene-YNCA0005W_Sparadoxus rna-YNCA0005W_Sparadoxus Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files