Gene name: SUB2
Reference locus (S288C): YDL084W
Gene biotype: protein_coding
Description: ATP-dependent RNA helicase SUB2; Component of the TREX complex required for nuclear mRNA export; member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56; relocalizes from nucleus to cytoplasm upon DNA replication stress
Top 10 interactors (score): THP2 (0.999); YRA1 (0.999); HPR1 (0.999); THO2 (0.999); MEX67 (0.996); MFT1 (0.994); MUD2 (0.987); PCF11 (0.986); PRP22 (0.974); GUA1 (0.971); TEX1 (0.967); RRP6 (0.967); LSM8 (0.965); IQG1 (0.962); SNU114 (0.961); HRB1 (0.959); BRR2 (0.958); STO1 (0.958); GBP2 (0.958); NAB2 (0.956)
Homologues (species, bitscore): DDX39B (Homo sapiens, 579.7); Ddx39b (Mus musculus, 578.9); bat1 (Danio rerio, 575.5); ddx39a (Xenopus tropicalis, 561.2); Hel25E (Drosophila melanogaster, 555.8); hel-1 (Caenorhabditis elegans, 546.6); UAP56a (Arabidopsis thaliana, 568.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:289850-291190:+ | gene-YDL084W_AKU4011 | rna-NM_001180143.1_AKU4011 | cds-NP_010199.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:258758-260098:- | gene-YDL084W_BG1 | rna-NM_001180143.1_BG1 | cds-NP_010199.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:307520-308860:+ | gene-YDL084W_Bruggeman | rna-NM_001180143.1_Bruggeman | cds-NP_010199.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:304008-305348:+ | gene-YDL084W_CAT1 | rna-NM_001180143.1_CAT1 | cds-NP_010199.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:288122-289462:+ | gene-YDL084W_CBS1585 | rna-NM_001180143.1_CBS1585 | cds-NP_010199.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:304789-306129:+ | gene-YDL084W_CBS436 | rna-NM_001180143.1_CBS436 | cds-NP_010199.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:286550-287890:+ | gene-YDL084W_CBS6412 | rna-NM_001180143.1_CBS6412 | cds-NP_010199.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:306176-307516:+ | gene-YDL084W_CBS6413 | rna-NM_001180143.1_CBS6413 | cds-NP_010199.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:304060-305400:+ | gene-YDL084W_CENPK1137D | rna-NM_001180143.1_CENPK1137D | cds-NP_010199.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:300885-302225:+ | gene-YDL084W_EthanolRed | rna-NM_001180143.1_EthanolRed | cds-NP_010199.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:306857-308197:+ | gene-YDL084W_FaliES1 | rna-NM_001180143.1_FaliES1 | cds-NP_010199.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:76908-78248:+ | gene-YDL084W_JAY291 | rna-NM_001180143.1_JAY291 | cds-NP_010199.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:305036-306376:+ | gene-YDL084W_MUCL30387 | rna-NM_001180143.1_MUCL30387 | cds-NP_010199.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:296060-297400:+ | gene-YDL084W_MUCL30388 | rna-NM_001180143.1_MUCL30388 | cds-NP_010199.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:289227-290567:+ | gene-YDL084W_MUCL39482 | rna-NM_001180143.1_MUCL39482 | cds-NP_010199.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:211237-212577:+ | gene-YDL084W_MUCL42920 | rna-NM_001180143.1_MUCL42920 | cds-NP_010199.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:305160-306500:+ | gene-YDL084W_NCIM3186 | rna-NM_001180143.1_NCIM3186 | cds-NP_010199.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:289242-290582:+ | gene-YDL084W_NCYC1407 | rna-NM_001180143.1_NCYC1407 | cds-NP_010199.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:296026-297366:+ | gene-YDL084W_PE2H3 | rna-NM_001180143.1_PE2H3 | cds-NP_010199.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:296025-297365:+ | gene-YDL084W_PE2H4 | rna-NM_001180143.1_PE2H4 | cds-NP_010199.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:305237-306577:+ | gene-YDL084W_S288C | rna-NM_001180143.1_S288C | cds-NP_010199.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:128345-129685:- | gene-YDL084W_SA1 | rna-NM_001180143.1_SA1 | cds-NP_010199.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:306368-307708:+ | gene-YDL084W_ThermosaccDry | rna-NM_001180143.1_ThermosaccDry | cds-NP_010199.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:308444-309784:+ | gene-YDL084W_VR1 | rna-NM_001180143.1_VR1 | cds-NP_010199.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:304282-305622:+ | gene-YDL084W_ZTW1 | rna-NM_001180143.1_ZTW1 | cds-NP_010199.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:306380-307720:+ | gene-YDL084W_Sparadoxus | rna-NM_001180143.1_Sparadoxus | cds-NP_010199.1_Sparadoxus | 94.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |