Gene name: STV1
Reference locus (S288C): YMR054W
Gene biotype: protein_coding
Description: V-type proton ATPase subunit a, Golgi isoform; Subunit a of the vacuolar-ATPase V0 domain; one of two isoforms (Stv1p and Vph1p); Stv1p is located in V-ATPase complexes of the Golgi and endosomes while Vph1p is located in V-ATPase complexes of the vacuole
Top 10 interactors (score): VMA16 (0.999); VMA7 (0.999); VMA13 (0.999); VMA11 (0.999); VMA1 (0.999); VMA3 (0.999); VMA4 (0.999); VMA10 (0.999); VMA5 (0.999); VMA2 (0.999); VMA8 (0.999); VMA6 (0.999); VPH1 (0.995); VMA9 (0.985); ATP2 (0.934); ATP4 (0.932); RAV1 (0.927); ATP5 (0.926); ATP6 (0.926); ATP15 (0.908)
Homologues (species, bitscore): ATP6V0A1 (Homo sapiens, 536.6); Atp6v0a1 (Mus musculus, 543.9); atp6v0a1b (Danio rerio, 546.6); atp6v0a1 (Xenopus tropicalis, 525.8); Vha100-2 (Drosophila melanogaster, 536.2); unc-32 (Caenorhabditis elegans, 508.1); VHA-A3 (Arabidopsis thaliana, 483.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:421031-423703:+ | gene-YMR054W_AKU4011 | rna-NM_001182552.1_AKU4011 | cds-NP_013770.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:119078-121750:- | gene-YMR054W_BG1 | rna-NM_001182552.1_BG1 | cds-NP_013770.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:363199-365871:+ | gene-YMR054W_Bruggeman | rna-NM_001182552.1_Bruggeman | cds-NP_013770.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:363526-366198:+ | gene-YMR054W_CAT1 | rna-NM_001182552.1_CAT1 | cds-NP_013770.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:353973-356645:+ | gene-YMR054W_CBS1585 | rna-NM_001182552.1_CBS1585 | cds-NP_013770.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:359525-362197:+ | gene-YMR054W_CBS436 | rna-NM_001182552.1_CBS436 | cds-NP_013770.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:467374-470046:+ | gene-YMR054W_CBS6412 | rna-NM_001182552.1_CBS6412 | cds-NP_013770.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:353228-355900:+ | gene-YMR054W_CBS6413 | rna-NM_001182552.1_CBS6413 | cds-NP_013770.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:377435-380107:+ | gene-YMR054W_CENPK1137D | rna-NM_001182552.1_CENPK1137D | cds-NP_013770.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:353822-356494:+ | gene-YMR054W_EthanolRed | rna-NM_001182552.1_EthanolRed | cds-NP_013770.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:356989-359661:+ | gene-YMR054W_FaliES1 | rna-NM_001182552.1_FaliES1 | cds-NP_013770.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:77276-79948:- | gene-YMR054W_JAY291 | rna-NM_001182552.1_JAY291 | cds-NP_013770.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:358940-361612:+ | gene-YMR054W_MUCL30387 | rna-NM_001182552.1_MUCL30387 | cds-NP_013770.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:363608-366280:+ | gene-YMR054W_MUCL30388 | rna-NM_001182552.1_MUCL30388 | cds-NP_013770.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:354261-356933:+ | gene-YMR054W_MUCL39482 | rna-NM_001182552.1_MUCL39482 | cds-NP_013770.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:360921-363593:+ | gene-YMR054W_MUCL42920 | rna-NM_001182552.1_MUCL42920 | cds-NP_013770.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:383257-385929:+ | gene-YMR054W_NCIM3186 | rna-NM_001182552.1_NCIM3186 | cds-NP_013770.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:354172-356844:+ | gene-YMR054W_NCYC1407 | rna-NM_001182552.1_NCYC1407 | cds-NP_013770.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:360127-362799:+ | gene-YMR054W_PE2H3 | rna-NM_001182552.1_PE2H3 | cds-NP_013770.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:366222-368894:+ | gene-YMR054W_PE2H4 | rna-NM_001182552.1_PE2H4 | cds-NP_013770.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:383303-385975:+ | gene-YMR054W_S288C | rna-NM_001182552.1_S288C | cds-NP_013770.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:164151-166823:- | gene-YMR054W_SA1 | rna-NM_001182552.1_SA1 | cds-NP_013770.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:354795-357467:+ | gene-YMR054W_ThermosaccDry | rna-NM_001182552.1_ThermosaccDry | cds-NP_013770.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:365068-367740:+ | gene-YMR054W_VR1 | rna-NM_001182552.1_VR1 | cds-NP_013770.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:333072-335744:+ | gene-YMR054W_ZTW1 | rna-NM_001182552.1_ZTW1 | cds-NP_013770.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:366703-369372:+ | gene-YMR054W_Sparadoxus | rna-NM_001182552.1_Sparadoxus | cds-NP_013770.1_Sparadoxus | 91.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |