Gene name: STP4
Reference locus (S288C): YDL048C
Gene biotype: protein_coding
Description: Protein containing a Kruppel-type zinc-finger domain; similar to Stp1p, Stp2p; predicted transcription factor; relative distribution to the nucleus increases upon DNA replication stress; STP4 has a paralog, STP3, that arose from the whole genome duplication
Top 10 interactors (score): COM2 (0.768); YMR230W-A (0.745); TPO3 (0.677); TPO2 (0.657); MBF1 (0.615); HPT1 (0.601); MAC1 (0.562); AZF1 (0.562); ISW1 (0.557); ECM13 (0.549); ARP8 (0.544); TOS8 (0.538); CST6 (0.505); CYB5 (0.499); SCM4 (0.499); ECM2 (0.489); TDA6 (0.483); TDA9 (0.483); IXR1 (0.479); RGS2 (0.475)
Homologues (species, bitscore): RREB1 (Homo sapiens, 52.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:351311-352783:- | gene-YDL048C_AKU4011 | rna-NM_001180107.1_AKU4011 | cds-NP_010235.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:196892-198364:+ | gene-YDL048C_BG1 | rna-NM_001180107.1_BG1 | cds-NP_010235.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:369130-370602:- | gene-YDL048C_Bruggeman | rna-NM_001180107.1_Bruggeman | cds-NP_010235.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:366073-367545:- | gene-YDL048C_CAT1 | rna-NM_001180107.1_CAT1 | cds-NP_010235.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:349591-351063:- | gene-YDL048C_CBS1585 | rna-NM_001180107.1_CBS1585 | cds-NP_010235.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:366293-367765:- | gene-YDL048C_CBS436 | rna-NM_001180107.1_CBS436 | cds-NP_010235.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:347659-349131:- | gene-YDL048C_CBS6412 | rna-NM_001180107.1_CBS6412 | cds-NP_010235.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:367685-369157:- | gene-YDL048C_CBS6413 | rna-NM_001180107.1_CBS6413 | cds-NP_010235.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:365551-367023:- | gene-YDL048C_CENPK1137D | rna-NM_001180107.1_CENPK1137D | cds-NP_010235.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:362144-363616:- | gene-YDL048C_EthanolRed | rna-NM_001180107.1_EthanolRed | cds-NP_010235.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:368391-369863:- | gene-YDL048C_FaliES1 | rna-NM_001180107.1_FaliES1 | cds-NP_010235.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000378.1:1099-2571:+ | gene-YDL048C_JAY291 | rna-NM_001180107.1_JAY291 | cds-NP_010235.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:366519-367991:- | gene-YDL048C_MUCL30387 | rna-NM_001180107.1_MUCL30387 | cds-NP_010235.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:357646-359118:- | gene-YDL048C_MUCL30388 | rna-NM_001180107.1_MUCL30388 | cds-NP_010235.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:350708-352180:- | gene-YDL048C_MUCL39482 | rna-NM_001180107.1_MUCL39482 | cds-NP_010235.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:272722-274200:- | gene-YDL048C_MUCL42920 | rna-NM_001180107.1_MUCL42920 | cds-NP_010235.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:366662-368134:- | gene-YDL048C_NCIM3186 | rna-NM_001180107.1_NCIM3186 | cds-NP_010235.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:350698-352170:- | gene-YDL048C_NCYC1407 | rna-NM_001180107.1_NCYC1407 | cds-NP_010235.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:357867-359339:- | gene-YDL048C_PE2H3 | rna-NM_001180107.1_PE2H3 | cds-NP_010235.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:357867-359339:- | gene-YDL048C_PE2H4 | rna-NM_001180107.1_PE2H4 | cds-NP_010235.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:366739-368211:- | gene-YDL048C_S288C | rna-NM_001180107.1_S288C | cds-NP_010235.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:66722-68194:+ | gene-YDL048C_SA1 | rna-NM_001180107.1_SA1 | cds-NP_010235.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:367843-369315:- | gene-YDL048C_ThermosaccDry | rna-NM_001180107.1_ThermosaccDry | cds-NP_010235.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:370756-372228:- | gene-YDL048C_VR1 | rna-NM_001180107.1_VR1 | cds-NP_010235.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:365774-367246:- | gene-YDL048C_ZTW1 | rna-NM_001180107.1_ZTW1 | cds-NP_010235.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:368230-369699:- | gene-YDL048C_Sparadoxus | rna-NM_001180107.1_Sparadoxus | cds-NP_010235.1_Sparadoxus | 89.1 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |