Gene name: STP3
Reference locus (S288C): YLR375W
Gene biotype: protein_coding
Description: Zinc-finger protein of unknown function; possibly involved in pre-tRNA splicing and in uptake of branched-chain amino acids; STP3 has a paralog, STP4, that arose from the whole genome duplication
Top 10 interactors (score): TDA9 (0.744); RSF2 (0.714); NHP10 (0.704); YER084W (0.696); BSC6 (0.68); YGR017W (0.616); SGN1 (0.604); IES5 (0.567); TOD6 (0.567); REI1 (0.564); NTE1 (0.553); RNH203 (0.53); CHD1 (0.525); PCI8 (0.525); IZH1 (0.509); NSI1 (0.5); RPO21 (0.499); CIP1 (0.497); MSS1 (0.495); TOS8 (0.494)
Homologues (species, bitscore): rreb1b (Danio rerio, 50.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:821232-822263:+ | gene-YLR375W_AKU4011 | rna-NM_001182264.3_AKU4011 | cds-NP_013479.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:53383-54414:+ | gene-YLR375W_BG1 | rna-NM_001182264.3_BG1 | cds-NP_013479.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:859566-860597:+ | gene-YLR375W_Bruggeman | rna-NM_001182264.3_Bruggeman | cds-NP_013479.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:855059-856090:+ | gene-YLR375W_CAT1 | rna-NM_001182264.3_CAT1 | cds-NP_013479.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:856222-857253:+ | gene-YLR375W_CBS1585 | rna-NM_001182264.3_CBS1585 | cds-NP_013479.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:840464-841495:+ | gene-YLR375W_CBS436 | rna-NM_001182264.3_CBS436 | cds-NP_013479.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:893244-894275:+ | gene-YLR375W_CBS6412 | rna-NM_001182264.3_CBS6412 | cds-NP_013479.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:857115-858146:+ | gene-YLR375W_CBS6413 | rna-NM_001182264.3_CBS6413 | cds-NP_013479.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:856468-857499:+ | gene-YLR375W_CENPK1137D | rna-NM_001182264.3_CENPK1137D | cds-NP_013479.3_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:813813-814844:+ | gene-YLR375W_EthanolRed | rna-NM_001182264.3_EthanolRed | cds-NP_013479.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:842618-843649:+ | gene-YLR375W_FaliES1 | rna-NM_001182264.3_FaliES1 | cds-NP_013479.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000161.1:53202-54233:+ | gene-YLR375W_JAY291 | rna-NM_001182264.3_JAY291 | cds-NP_013479.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:856970-858001:+ | gene-YLR375W_MUCL30387 | rna-NM_001182264.3_MUCL30387 | cds-NP_013479.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:862600-863631:+ | gene-YLR375W_MUCL30388 | rna-NM_001182264.3_MUCL30388 | cds-NP_013479.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:857441-858472:+ | gene-YLR375W_MUCL39482 | rna-NM_001182264.3_MUCL39482 | cds-NP_013479.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:852738-853769:+ | gene-YLR375W_MUCL42920 | rna-NM_001182264.3_MUCL42920 | cds-NP_013479.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:871671-872702:+ | gene-YLR375W_NCIM3186 | rna-NM_001182264.3_NCIM3186 | cds-NP_013479.3_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:866663-867694:+ | gene-YLR375W_NCYC1407 | rna-NM_001182264.3_NCYC1407 | cds-NP_013479.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:853621-854652:+ | gene-YLR375W_PE2H3 | rna-NM_001182264.3_PE2H3 | cds-NP_013479.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:853365-854396:+ | gene-YLR375W_PE2H4 | rna-NM_001182264.3_PE2H4 | cds-NP_013479.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:871697-872728:+ | gene-YLR375W_S288C | rna-NM_001182264.3_S288C | cds-NP_013479.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:175964-176995:- | gene-YLR375W_SA1 | rna-NM_001182264.3_SA1 | cds-NP_013479.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:845699-846730:+ | gene-YLR375W_ThermosaccDry | rna-NM_001182264.3_ThermosaccDry | cds-NP_013479.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:858711-859742:+ | gene-YLR375W_VR1 | rna-NM_001182264.3_VR1 | cds-NP_013479.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:182885-183915:+ | gene-YLR375W_ZTW1 | rna-NM_001182264.3_ZTW1 | cds-NP_013479.3_ZTW1 | 99.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:831588-832619:+ | gene-YLR375W_Sparadoxus | rna-NM_001182264.3_Sparadoxus | cds-NP_013479.3_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |