Gene name: STO1
Reference locus (S288C): YMR125W
Gene biotype: protein_coding
Description: Large subunit of the nuclear mRNA cap-binding protein complex; interacts with Npl3p to carry nuclear poly(A)+ mRNA to cytoplasm; also involved in nuclear mRNA degradation and telomere maintenance; orthologous to mammalian CBP80; Belongs to the NCBP1 family
Top 10 interactors (score): CBC2 (0.999); SNU66 (0.999); CDC33 (0.998); YHC1 (0.997); YRA1 (0.996); NAM7 (0.996); SMD1 (0.994); TIF4631 (0.993); TIF4632 (0.993); SMD3 (0.993); SNU56 (0.993); NAM8 (0.992); PRP42 (0.992); MTR4 (0.991); SNP1 (0.991); MEX67 (0.99); SRP1 (0.988); PAB1 (0.984); SMB1 (0.984); PRP40 (0.982)
Homologues (species, bitscore): NCBP1 (Homo sapiens, 83.6); Ncbp1 (Mus musculus, 82.0); ncbp1 (Xenopus tropicalis, 95.9); Cbp80 (Drosophila melanogaster, 110.2); ncbp-1 (Caenorhabditis elegans, 84.7); ABH1 (Arabidopsis thaliana, 86.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:557038-559945:+ | gene-YMR125W_AKU4011 | rna-NM_001182626.1_AKU4011 | cds-NP_013844.2_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:112588-115495:- | gene-YMR125W_BG1 | rna-NM_001182626.1_BG1 | cds-NP_013844.2_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:500219-503126:+ | gene-YMR125W_Bruggeman | rna-NM_001182626.1_Bruggeman | cds-NP_013844.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:502433-505340:+ | gene-YMR125W_CAT1 | rna-NM_001182626.1_CAT1 | cds-NP_013844.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:489961-492868:+ | gene-YMR125W_CBS1585 | rna-NM_001182626.1_CBS1585 | cds-NP_013844.2_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:493834-496741:+ | gene-YMR125W_CBS436 | rna-NM_001182626.1_CBS436 | cds-NP_013844.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:602954-605861:+ | gene-YMR125W_CBS6412 | rna-NM_001182626.1_CBS6412 | cds-NP_013844.2_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:488521-491428:+ | gene-YMR125W_CBS6413 | rna-NM_001182626.1_CBS6413 | cds-NP_013844.2_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:512053-514960:+ | gene-YMR125W_CENPK1137D | rna-NM_001182626.1_CENPK1137D | cds-NP_013844.2_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:488151-491058:+ | gene-YMR125W_EthanolRed | rna-NM_001182626.1_EthanolRed | cds-NP_013844.2_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:494092-496999:+ | gene-YMR125W_FaliES1 | rna-NM_001182626.1_FaliES1 | cds-NP_013844.2_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000294.1:29991-32898:- | gene-YMR125W_JAY291 | rna-NM_001182626.1_JAY291 | cds-NP_013844.2_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:494944-497851:+ | gene-YMR125W_MUCL30387 | rna-NM_001182626.1_MUCL30387 | cds-NP_013844.2_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:500470-503377:+ | gene-YMR125W_MUCL30388 | rna-NM_001182626.1_MUCL30388 | cds-NP_013844.2_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:490662-493569:+ | gene-YMR125W_MUCL39482 | rna-NM_001182626.1_MUCL39482 | cds-NP_013844.2_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:496957-499864:+ | gene-YMR125W_MUCL42920 | rna-NM_001182626.1_MUCL42920 | cds-NP_013844.2_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:517493-520400:+ | gene-YMR125W_NCIM3186 | rna-NM_001182626.1_NCIM3186 | cds-NP_013844.2_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:490300-493207:+ | gene-YMR125W_NCYC1407 | rna-NM_001182626.1_NCYC1407 | cds-NP_013844.2_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:500736-503643:+ | gene-YMR125W_PE2H3 | rna-NM_001182626.1_PE2H3 | cds-NP_013844.2_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:501190-504097:+ | gene-YMR125W_PE2H4 | rna-NM_001182626.1_PE2H4 | cds-NP_013844.2_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:517539-520446:+ | gene-YMR125W_S288C | rna-NM_001182626.1_S288C | cds-NP_013844.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:50829-53736:- | gene-YMR125W_SA1 | rna-NM_001182626.1_SA1 | cds-NP_013844.2_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:490549-493456:+ | gene-YMR125W_ThermosaccDry | rna-NM_001182626.1_ThermosaccDry | cds-NP_013844.2_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:503238-506145:+ | gene-YMR125W_VR1 | rna-NM_001182626.1_VR1 | cds-NP_013844.2_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:465694-468601:+ | gene-YMR125W_ZTW1 | rna-NM_001182626.1_ZTW1 | cds-NP_013844.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:502009-504916:+ | gene-YMR125W_Sparadoxus | rna-NM_001182626.1_Sparadoxus | cds-NP_013844.2_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |