Gene name: STH1
Reference locus (S288C): YIL126W
Gene biotype: protein_coding
Description: Nuclear protein STH1/NPS1; ATPase component of the RSC chromatin remodeling complex; required for expression of early meiotic genes; promotes base excision repair in chromatin; essential helicase-related protein homologous to Snf2p
Top 10 interactors (score): SFH1 (0.999); RSC6 (0.999); RSC2 (0.999); RSC1 (0.999); RTT102 (0.999); RSC8 (0.999); RSC9 (0.999); ARP7 (0.999); RSC3 (0.999); ARP9 (0.999); RSC58 (0.999); SNF5 (0.999); NPL6 (0.999); RSC4 (0.999); RSC30 (0.998); HTL1 (0.998); LDB7 (0.997); RPO21 (0.995); ARP4 (0.993); HHT2 (0.991)
Homologues (species, bitscore): SMARCA2 (Homo sapiens, 820.8); Smarca4 (Mus musculus, 822.0); smarca4 (Danio rerio, 810.1); smarca2 (Xenopus tropicalis, 799.7); brm (Drosophila melanogaster, 807.7); swsn-4 (Caenorhabditis elegans, 783.1); ATCHR12 (Arabidopsis thaliana, 669.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:119212-123291:+ | gene-YIL126W_AKU4011 | rna-NM_001179474.1_AKU4011 | cds-NP_012140.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000174.1:14468-18547:- | gene-YIL126W_BG1 | rna-NM_001179474.1_BG1 | cds-NP_012140.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:121962-126041:+ | gene-YIL126W_Bruggeman | rna-NM_001179474.1_Bruggeman | cds-NP_012140.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:115842-119921:+ | gene-YIL126W_CAT1 | rna-NM_001179474.1_CAT1 | cds-NP_012140.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:119444-123523:+ | gene-YIL126W_CBS1585 | rna-NM_001179474.1_CBS1585 | cds-NP_012140.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:110581-114660:+ | gene-YIL126W_CBS436 | rna-NM_001179474.1_CBS436 | cds-NP_012140.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:116931-121010:+ | gene-YIL126W_CBS6412 | rna-NM_001179474.1_CBS6412 | cds-NP_012140.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:110691-114770:+ | gene-YIL126W_CBS6413 | rna-NM_001179474.1_CBS6413 | cds-NP_012140.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:109700-113779:+ | gene-YIL126W_CENPK1137D | rna-NM_001179474.1_CENPK1137D | cds-NP_012140.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:104496-108575:+ | gene-YIL126W_EthanolRed | rna-NM_001179474.1_EthanolRed | cds-NP_012140.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:120547-124626:+ | gene-YIL126W_FaliES1 | rna-NM_001179474.1_FaliES1 | cds-NP_012140.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000383.1:24707-28786:- | gene-YIL126W_JAY291 | rna-NM_001179474.1_JAY291 | cds-NP_012140.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:119817-123896:+ | gene-YIL126W_MUCL30387 | rna-NM_001179474.1_MUCL30387 | cds-NP_012140.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:119401-123480:+ | gene-YIL126W_MUCL30388 | rna-NM_001179474.1_MUCL30388 | cds-NP_012140.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:120389-124468:+ | gene-YIL126W_MUCL39482 | rna-NM_001179474.1_MUCL39482 | cds-NP_012140.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:123575-127654:+ | gene-YIL126W_MUCL42920 | rna-NM_001179474.1_MUCL42920 | cds-NP_012140.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:117992-122071:+ | gene-YIL126W_NCIM3186 | rna-NM_001179474.1_NCIM3186 | cds-NP_012140.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:124375-128454:+ | gene-YIL126W_NCYC1407 | rna-NM_001179474.1_NCYC1407 | cds-NP_012140.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:119055-123134:+ | gene-YIL126W_PE2H3 | rna-NM_001179474.1_PE2H3 | cds-NP_012140.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:113030-117109:+ | gene-YIL126W_PE2H4 | rna-NM_001179474.1_PE2H4 | cds-NP_012140.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:117992-122071:+ | gene-YIL126W_S288C | rna-NM_001179474.1_S288C | cds-NP_012140.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000058.1:61186-65265:- | gene-YIL126W_SA1 | rna-NM_001179474.1_SA1 | cds-NP_012140.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:119204-123283:+ | gene-YIL126W_ThermosaccDry | rna-NM_001179474.1_ThermosaccDry | cds-NP_012140.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:116364-120443:+ | gene-YIL126W_VR1 | rna-NM_001179474.1_VR1 | cds-NP_012140.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:94140-98219:+ | gene-YIL126W_ZTW1 | rna-NM_001179474.1_ZTW1 | cds-NP_012140.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:111948-116018:+ | gene-YIL126W_Sparadoxus | rna-NM_001179474.1_Sparadoxus | cds-NP_012140.1_Sparadoxus | 90.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |