Gene name: STB3
Reference locus (S288C): YDR169C
Gene biotype: protein_coding
Description: Protein STB3; Ribosomal RNA processing element (RRPE)-binding protein; involved in the glucose-induced transition from quiescence to growth; restricted to nucleus in quiescent cells, released into cytoplasm after glucose repletion; binds Sin3p; relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): DOT6 (0.951); TOD6 (0.949); SCH9 (0.928); IFH1 (0.901); SFP1 (0.865); MRS6 (0.844); RRN3 (0.764); FHL1 (0.762); RPD3 (0.741); STB6 (0.674); STB4 (0.651); RAP1 (0.591); HMO1 (0.575); MSN2 (0.56); TMA16 (0.554); SIN3 (0.53); AZF1 (0.509); TRP3 (0.495); TRP2 (0.495); TBF1 (0.485)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:763644-765185:- | gene-YDR169C_AKU4011 | rna-NM_001180476.1_AKU4011 | cds-NP_010453.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:361571-363112:+ | gene-YDR169C_BG1 | rna-NM_001180476.1_BG1 | cds-NP_010453.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:795142-796683:- | gene-YDR169C_Bruggeman | rna-NM_001180476.1_Bruggeman | cds-NP_010453.1_Bruggeman | 99.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:782415-783956:- | gene-YDR169C_CAT1 | rna-NM_001180476.1_CAT1 | cds-NP_010453.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:754012-755553:- | gene-YDR169C_CBS1585 | rna-NM_001180476.1_CBS1585 | cds-NP_010453.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:780204-781745:- | gene-YDR169C_CBS436 | rna-NM_001180476.1_CBS436 | cds-NP_010453.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:749461-751002:- | gene-YDR169C_CBS6412 | rna-NM_001180476.1_CBS6412 | cds-NP_010453.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:777909-779450:- | gene-YDR169C_CBS6413 | rna-NM_001180476.1_CBS6413 | cds-NP_010453.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:793008-794549:- | gene-YDR169C_CENPK1137D | rna-NM_001180476.1_CENPK1137D | cds-NP_010453.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:763470-765011:- | gene-YDR169C_EthanolRed | rna-NM_001180476.1_EthanolRed | cds-NP_010453.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:771682-773223:- | gene-YDR169C_FaliES1 | rna-NM_001180476.1_FaliES1 | cds-NP_010453.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000119.1:9038-10579:+ | gene-YDR169C_JAY291 | rna-NM_001180476.1_JAY291 | cds-NP_010453.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:780520-782061:- | gene-YDR169C_MUCL30387 | rna-NM_001180476.1_MUCL30387 | cds-NP_010453.1_MUCL30387 | 99.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:769030-770571:- | gene-YDR169C_MUCL30388 | rna-NM_001180476.1_MUCL30388 | cds-NP_010453.1_MUCL30388 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:755439-756980:- | gene-YDR169C_MUCL39482 | rna-NM_001180476.1_MUCL39482 | cds-NP_010453.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:693262-694803:- | gene-YDR169C_MUCL42920 | rna-NM_001180476.1_MUCL42920 | cds-NP_010453.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:792271-793812:- | gene-YDR169C_NCIM3186 | rna-NM_001180476.1_NCIM3186 | cds-NP_010453.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:754844-756385:- | gene-YDR169C_NCYC1407 | rna-NM_001180476.1_NCYC1407 | cds-NP_010453.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:774035-775576:- | gene-YDR169C_PE2H3 | rna-NM_001180476.1_PE2H3 | cds-NP_010453.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:773340-774881:- | gene-YDR169C_PE2H4 | rna-NM_001180476.1_PE2H4 | cds-NP_010453.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:792348-793889:- | gene-YDR169C_S288C | rna-NM_001180476.1_S288C | cds-NP_010453.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:139546-141087:- | gene-YDR169C_SA1 | rna-NM_001180476.1_SA1 | cds-NP_010453.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:769817-771358:- | gene-YDR169C_ThermosaccDry | rna-NM_001180476.1_ThermosaccDry | cds-NP_010453.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:784804-786345:- | gene-YDR169C_VR1 | rna-NM_001180476.1_VR1 | cds-NP_010453.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:32565-34106:- | gene-YDR169C_ZTW1 | rna-NM_001180476.1_ZTW1 | cds-NP_010453.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:776012-777553:- | gene-YDR169C_Sparadoxus | rna-NM_001180476.1_Sparadoxus | cds-NP_010453.1_Sparadoxus | 89.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |