Gene name: SSU72
Reference locus (S288C): YNL222W
Gene biotype: protein_coding
Description: RNA polymerase II subunit A C-terminal domain phosphatase SSU72; Phosphatase and transcription/RNA-processing factor; associates with TFIIB and cleavage/polyadenylation factor Pta1p; exhibits phosphatase activity on serine-5 and serine-7 of the RNA polymerase II C-terminal domain; affects start site selection and transcriptional read through in vivo
Top 10 interactors (score): SWD2 (0.999); YSH1 (0.999); SYC1 (0.999); PTI1 (0.999); PTA1 (0.999); PAP1 (0.999); REF2 (0.999); YTH1 (0.999); PFS2 (0.999); RPO21 (0.999); FIP1 (0.999); CFT1 (0.999); MPE1 (0.999); CFT2 (0.999); GLC7 (0.999); SUA7 (0.998); PCF11 (0.998); FCP1 (0.996); RNA14 (0.994); RNA15 (0.994)
Homologues (species, bitscore): SSU72 (Homo sapiens, 172.6); Ssu72 (Mus musculus, 174.9); ssu72 (Danio rerio, 172.2); ssu72 (Xenopus tropicalis, 169.1); Ssu72 (Drosophila melanogaster, 171.4); ssup-72 (Caenorhabditis elegans, 164.9); AT1G73820 (Arabidopsis thaliana, 171.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:222874-223494:+ | gene-YNL222W_AKU4011 | rna-NM_001183060.1_AKU4011 | cds-NP_014177.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:126817-127437:+ | gene-YNL222W_BG1 | rna-NM_001183060.1_BG1 | cds-NP_014177.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:232923-233543:+ | gene-YNL222W_Bruggeman | rna-NM_001183060.1_Bruggeman | cds-NP_014177.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:240079-240699:+ | gene-YNL222W_CAT1 | rna-NM_001183060.1_CAT1 | cds-NP_014177.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:223271-223891:+ | gene-YNL222W_CBS1585 | rna-NM_001183060.1_CBS1585 | cds-NP_014177.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:218354-218974:+ | gene-YNL222W_CBS436 | rna-NM_001183060.1_CBS436 | cds-NP_014177.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:219305-219925:+ | gene-YNL222W_CBS6412 | rna-NM_001183060.1_CBS6412 | cds-NP_014177.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:219953-220573:+ | gene-YNL222W_CBS6413 | rna-NM_001183060.1_CBS6413 | cds-NP_014177.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:222897-223517:+ | gene-YNL222W_CENPK1137D | rna-NM_001183060.1_CENPK1137D | cds-NP_014177.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:220509-221129:+ | gene-YNL222W_EthanolRed | rna-NM_001183060.1_EthanolRed | cds-NP_014177.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:215251-215871:+ | gene-YNL222W_FaliES1 | rna-NM_001183060.1_FaliES1 | cds-NP_014177.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:126407-127027:+ | gene-YNL222W_JAY291 | rna-NM_001183060.1_JAY291 | cds-NP_014177.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:228459-229079:+ | gene-YNL222W_MUCL30387 | rna-NM_001183060.1_MUCL30387 | cds-NP_014177.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:227042-227662:+ | gene-YNL222W_MUCL30388 | rna-NM_001183060.1_MUCL30388 | cds-NP_014177.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:220761-221381:+ | gene-YNL222W_MUCL39482 | rna-NM_001183060.1_MUCL39482 | cds-NP_014177.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:223015-223635:+ | gene-YNL222W_MUCL42920 | rna-NM_001183060.1_MUCL42920 | cds-NP_014177.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:229063-229683:+ | gene-YNL222W_NCIM3186 | rna-NM_001183060.1_NCIM3186 | cds-NP_014177.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:222853-223473:+ | gene-YNL222W_NCYC1407 | rna-NM_001183060.1_NCYC1407 | cds-NP_014177.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:219752-220372:+ | gene-YNL222W_PE2H3 | rna-NM_001183060.1_PE2H3 | cds-NP_014177.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:219140-219760:+ | gene-YNL222W_PE2H4 | rna-NM_001183060.1_PE2H4 | cds-NP_014177.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:229094-229714:+ | gene-YNL222W_S288C | rna-NM_001183060.1_S288C | cds-NP_014177.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000040.1:22590-23210:- | gene-YNL222W_SA1 | rna-NM_001183060.1_SA1 | cds-NP_014177.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:216107-216727:+ | gene-YNL222W_ThermosaccDry | rna-NM_001183060.1_ThermosaccDry | cds-NP_014177.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:235108-235728:+ | gene-YNL222W_VR1 | rna-NM_001183060.1_VR1 | cds-NP_014177.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:126439-127059:+ | gene-YNL222W_ZTW1 | rna-NM_001183060.1_ZTW1 | cds-NP_014177.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:226513-227133:+ | gene-YNL222W_Sparadoxus | rna-NM_001183060.1_Sparadoxus | cds-NP_014177.1_Sparadoxus | 96.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |