Gene name: SSS1
Reference locus (S288C): YDR086C
Gene biotype: protein_coding
Description: Protein transport protein SSS1; Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p); this complex forms a channel for passage of secretory proteins through the endoplasmic reticulum membrane, and of the Ssh1p complex (Ssh1p-Sbh2p-Sss1p); interacts with Ost4p and Wbp1p; Belongs to the SecE/SEC61-gamma family
Top 10 interactors (score): SBH1 (0.999); SEC61 (0.999); SBH2 (0.999); SEC63 (0.999); SSH1 (0.998); SEC62 (0.998); RPL29 (0.996); RPL30 (0.996); RPL25 (0.994); RPL38 (0.992); SEC72 (0.99); RPL39 (0.988); SEC66 (0.983); KAR2 (0.983); RPL35B (0.983); RPL35A (0.981); RPL42A (0.975); RPL31A (0.972); RPL42B (0.971); RPL26A (0.97)
Homologues (species, bitscore): SEC61G (Homo sapiens, 66.2); Sec61g (Mus musculus, 67.8); sec61g (Danio rerio, 66.2); sec61g (Xenopus tropicalis, 66.6); Sec61gamma (Drosophila melanogaster, 58.9); emo-1 (Caenorhabditis elegans, 65.5); SEC61G1 (Arabidopsis thaliana, 58.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:594487-594729:- | gene-YDR086C_AKU4011 | rna-NM_001180394.1_AKU4011 | cds-NP_010371.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:530589-530831:+ | gene-YDR086C_BG1 | rna-NM_001180394.1_BG1 | cds-NP_010371.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:626714-626956:- | gene-YDR086C_Bruggeman | rna-NM_001180394.1_Bruggeman | cds-NP_010371.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:611402-611644:- | gene-YDR086C_CAT1 | rna-NM_001180394.1_CAT1 | cds-NP_010371.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:585508-585750:- | gene-YDR086C_CBS1585 | rna-NM_001180394.1_CBS1585 | cds-NP_010371.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:610522-610764:- | gene-YDR086C_CBS436 | rna-NM_001180394.1_CBS436 | cds-NP_010371.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:581921-582163:- | gene-YDR086C_CBS6412 | rna-NM_001180394.1_CBS6412 | cds-NP_010371.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:610453-610695:- | gene-YDR086C_CBS6413 | rna-NM_001180394.1_CBS6413 | cds-NP_010371.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:615973-616215:- | gene-YDR086C_CENPK1137D | rna-NM_001180394.1_CENPK1137D | cds-NP_010371.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:596278-596520:- | gene-YDR086C_EthanolRed | rna-NM_001180394.1_EthanolRed | cds-NP_010371.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:603072-603314:- | gene-YDR086C_FaliES1 | rna-NM_001180394.1_FaliES1 | cds-NP_010371.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:27955-28197:+ | gene-YDR086C_JAY291 | rna-NM_001180394.1_JAY291 | cds-NP_010371.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:611331-611573:- | gene-YDR086C_MUCL30387 | rna-NM_001180394.1_MUCL30387 | cds-NP_010371.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:601643-601885:- | gene-YDR086C_MUCL30388 | rna-NM_001180394.1_MUCL30388 | cds-NP_010371.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:586878-587120:- | gene-YDR086C_MUCL39482 | rna-NM_001180394.1_MUCL39482 | cds-NP_010371.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:518327-518569:- | gene-YDR086C_MUCL42920 | rna-NM_001180394.1_MUCL42920 | cds-NP_010371.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:616851-617093:- | gene-YDR086C_NCIM3186 | rna-NM_001180394.1_NCIM3186 | cds-NP_010371.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:585785-586027:- | gene-YDR086C_NCYC1407 | rna-NM_001180394.1_NCYC1407 | cds-NP_010371.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:605253-605495:- | gene-YDR086C_PE2H3 | rna-NM_001180394.1_PE2H3 | cds-NP_010371.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:604558-604800:- | gene-YDR086C_PE2H4 | rna-NM_001180394.1_PE2H4 | cds-NP_010371.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:616928-617170:- | gene-YDR086C_S288C | rna-NM_001180394.1_S288C | cds-NP_010371.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:28164-28406:+ | gene-YDR086C_SA1 | rna-NM_001180394.1_SA1 | cds-NP_010371.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:602602-602844:- | gene-YDR086C_ThermosaccDry | rna-NM_001180394.1_ThermosaccDry | cds-NP_010371.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:615153-615395:- | gene-YDR086C_VR1 | rna-NM_001180394.1_VR1 | cds-NP_010371.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:600185-600427:- | gene-YDR086C_ZTW1 | rna-NM_001180394.1_ZTW1 | cds-NP_010371.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:604908-605150:- | gene-YDR086C_Sparadoxus | rna-NM_001180394.1_Sparadoxus | cds-NP_010371.1_Sparadoxus | 95.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |