Gene name: SSQ1
Reference locus (S288C): YLR369W
Gene biotype: protein_coding
Description: Heat shock protein SSQ1, mitochondrial; Mitochondrial hsp70-type molecular chaperone; required for assembly of iron/sulfur clusters into proteins at a step after cluster synthesis, and for maturation of Yfh1p, which is a homolog of human frataxin implicated in Friedreich's ataxia
Top 10 interactors (score): JAC1 (0.999); ISU1 (0.998); MGE1 (0.992); YFH1 (0.975); MDJ1 (0.973); TIM44 (0.972); GRX5 (0.97); ISD11 (0.97); ZUO1 (0.965); ISU2 (0.956); NFS1 (0.947); YAH1 (0.941); NFU1 (0.93); SSE2 (0.918); SSE1 (0.917); ISA2 (0.915); GLE2 (0.911); NUP145 (0.908); NUP2 (0.908); NIC96 (0.908)
Homologues (species, bitscore): HSPA9 (Homo sapiens, 609.4); Hspa9 (Mus musculus, 606.3); hspa9 (Danio rerio, 607.1); hspa9 (Xenopus tropicalis, 547.4); Hsc70-5 (Drosophila melanogaster, 620.2); hsp-6 (Caenorhabditis elegans, 612.8); mtHsc70-1 (Arabidopsis thaliana, 588.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:809089-811062:+ | gene-YLR369W_AKU4011 | rna-NM_001182258.1_AKU4011 | cds-NP_013473.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:41239-43213:+ | gene-YLR369W_BG1 | rna-NM_001182258.1_BG1 | cds-NP_013473.1_BG1 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:847411-849384:+ | gene-YLR369W_Bruggeman | rna-NM_001182258.1_Bruggeman | cds-NP_013473.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:842915-844889:+ | gene-YLR369W_CAT1 | rna-NM_001182258.1_CAT1 | cds-NP_013473.1_CAT1 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:844082-846055:+ | gene-YLR369W_CBS1585 | rna-NM_001182258.1_CBS1585 | cds-NP_013473.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:828320-830294:+ | gene-YLR369W_CBS436 | rna-NM_001182258.1_CBS436 | cds-NP_013473.1_CBS436 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:881088-883061:+ | gene-YLR369W_CBS6412 | rna-NM_001182258.1_CBS6412 | cds-NP_013473.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:844972-846945:+ | gene-YLR369W_CBS6413 | rna-NM_001182258.1_CBS6413 | cds-NP_013473.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:844276-846249:+ | gene-YLR369W_CENPK1137D | rna-NM_001182258.1_CENPK1137D | cds-NP_013473.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:801659-803632:+ | gene-YLR369W_EthanolRed | rna-NM_001182258.1_EthanolRed | cds-NP_013473.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:830464-832437:+ | gene-YLR369W_FaliES1 | rna-NM_001182258.1_FaliES1 | cds-NP_013473.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000161.1:41056-43030:+ | gene-YLR369W_JAY291 | rna-NM_001182258.1_JAY291 | cds-NP_013473.1_JAY291 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:844828-846801:+ | gene-YLR369W_MUCL30387 | rna-NM_001182258.1_MUCL30387 | cds-NP_013473.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:850445-852418:+ | gene-YLR369W_MUCL30388 | rna-NM_001182258.1_MUCL30388 | cds-NP_013473.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:845301-847274:+ | gene-YLR369W_MUCL39482 | rna-NM_001182258.1_MUCL39482 | cds-NP_013473.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:840584-842557:+ | gene-YLR369W_MUCL42920 | rna-NM_001182258.1_MUCL42920 | cds-NP_013473.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:859526-861499:+ | gene-YLR369W_NCIM3186 | rna-NM_001182258.1_NCIM3186 | cds-NP_013473.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:854521-856494:+ | gene-YLR369W_NCYC1407 | rna-NM_001182258.1_NCYC1407 | cds-NP_013473.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:841477-843451:+ | gene-YLR369W_PE2H3 | rna-NM_001182258.1_PE2H3 | cds-NP_013473.1_PE2H3 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:841221-843195:+ | gene-YLR369W_PE2H4 | rna-NM_001182258.1_PE2H4 | cds-NP_013473.1_PE2H4 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:859552-861525:+ | gene-YLR369W_S288C | rna-NM_001182258.1_S288C | cds-NP_013473.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:187165-189139:- | gene-YLR369W_SA1 | rna-NM_001182258.1_SA1 | cds-NP_013473.1_SA1 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:833296-835269:+ | gene-YLR369W_ThermosaccDry | rna-NM_001182258.1_ThermosaccDry | cds-NP_013473.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:846567-848541:+ | gene-YLR369W_VR1 | rna-NM_001182258.1_VR1 | cds-NP_013473.1_VR1 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:170745-172718:+ | gene-YLR369W_ZTW1 | rna-NM_001182258.1_ZTW1 | cds-NP_013473.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:819447-821420:+ | gene-YLR369W_Sparadoxus | rna-NM_001182258.1_Sparadoxus | cds-NP_013473.1_Sparadoxus | 89.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |