Gene name: SSO2
Reference locus (S288C): YMR183C
Gene biotype: protein_coding
Description: Protein SSO2; Plasma membrane t-SNARE; involved in fusion of secretory vesicles at the plasma membrane; syntaxin homolog that is functionally redundant with Sso1p; SSO2 has a paralog, SSO1, that arose from the whole genome duplication
Top 10 interactors (score): SNC2 (0.999); SNC1 (0.999); SEC9 (0.999); SEC1 (0.999); SEC17 (0.997); SPO20 (0.993); YKT6 (0.992); SEC22 (0.987); SEC3 (0.984); SEC18 (0.981); SLY1 (0.965); MSO1 (0.956); SSO1 (0.953); NYV1 (0.951); SED5 (0.95); TLG1 (0.942); VTI1 (0.936); VAM3 (0.929); PEP12 (0.92); VAM7 (0.916)
Homologues (species, bitscore): STX1A (Homo sapiens, 103.2); Stx1a (Mus musculus, 102.4); stx1b (Danio rerio, 94.0); stx1a (Xenopus tropicalis, 97.8); Syx1A (Drosophila melanogaster, 97.8); unc-64 (Caenorhabditis elegans, 101.7); SYP131 (Arabidopsis thaliana, 87.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:666854-667741:- | gene-YMR183C_AKU4011 | rna-NM_001182689.1_AKU4011 | cds-NP_013908.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:5303-6190:+ | gene-YMR183C_BG1 | rna-NM_001182689.1_BG1 | cds-NP_013908.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:611070-611957:- | gene-YMR183C_Bruggeman | rna-NM_001182689.1_Bruggeman | cds-NP_013908.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:613815-614702:- | gene-YMR183C_CAT1 | rna-NM_001182689.1_CAT1 | cds-NP_013908.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:599110-599997:- | gene-YMR183C_CBS1585 | rna-NM_001182689.1_CBS1585 | cds-NP_013908.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:603374-604261:- | gene-YMR183C_CBS436 | rna-NM_001182689.1_CBS436 | cds-NP_013908.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:710669-711556:- | gene-YMR183C_CBS6412 | rna-NM_001182689.1_CBS6412 | cds-NP_013908.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:598259-599146:- | gene-YMR183C_CBS6413 | rna-NM_001182689.1_CBS6413 | cds-NP_013908.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:621500-622387:- | gene-YMR183C_CENPK1137D | rna-NM_001182689.1_CENPK1137D | cds-NP_013908.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:659299-660186:- | gene-YMR183C_EthanolRed | rna-NM_001182689.1_EthanolRed | cds-NP_013908.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:604955-605842:- | gene-YMR183C_FaliES1 | rna-NM_001182689.1_FaliES1 | cds-NP_013908.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000265.1:5218-6105:+ | gene-YMR183C_JAY291 | rna-NM_001182689.1_JAY291 | cds-NP_013908.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:604616-605503:- | gene-YMR183C_MUCL30387 | rna-NM_001182689.1_MUCL30387 | cds-NP_013908.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:611396-612283:- | gene-YMR183C_MUCL30388 | rna-NM_001182689.1_MUCL30388 | cds-NP_013908.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:600182-601069:- | gene-YMR183C_MUCL39482 | rna-NM_001182689.1_MUCL39482 | cds-NP_013908.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:607515-608402:- | gene-YMR183C_MUCL42920 | rna-NM_001182689.1_MUCL42920 | cds-NP_013908.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:626875-627762:- | gene-YMR183C_NCIM3186 | rna-NM_001182689.1_NCIM3186 | cds-NP_013908.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:599834-600721:- | gene-YMR183C_NCYC1407 | rna-NM_001182689.1_NCYC1407 | cds-NP_013908.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:609703-610590:- | gene-YMR183C_PE2H3 | rna-NM_001182689.1_PE2H3 | cds-NP_013908.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:610689-611576:- | gene-YMR183C_PE2H4 | rna-NM_001182689.1_PE2H4 | cds-NP_013908.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:626921-627808:- | gene-YMR183C_S288C | rna-NM_001182689.1_S288C | cds-NP_013908.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:180305-181192:+ | gene-YMR183C_SA1 | rna-NM_001182689.1_SA1 | cds-NP_013908.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:601081-601968:- | gene-YMR183C_ThermosaccDry | rna-NM_001182689.1_ThermosaccDry | cds-NP_013908.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:614251-615138:- | gene-YMR183C_VR1 | rna-NM_001182689.1_VR1 | cds-NP_013908.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:16870-17757:- | gene-YMR183C_ZTW1 | rna-NM_001182689.1_ZTW1 | cds-NP_013908.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:618996-619883:- | gene-YMR183C_Sparadoxus | rna-NM_001182689.1_Sparadoxus | cds-NP_013908.1_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |