Gene name: SSO1
Reference locus (S288C): YPL232W
Gene biotype: protein_coding
Description: Protein SSO1; Plasma membrane t-SNARE; involved in fusion of secretory vesicles at the plasma membrane and in vesicle fusion during sporulation; forms a complex with Sec9p that binds v-SNARE Snc2p; syntaxin homolog; functionally redundant with Sso2p; SSO1 has a paralog, SSO2, that arose from the whole genome duplication
Top 10 interactors (score): SEC22 (0.999); SEC1 (0.999); SEC17 (0.999); SPO20 (0.999); SNC1 (0.999); SNC2 (0.999); SEC9 (0.999); YKT6 (0.998); TLG2 (0.995); MSO1 (0.995); NYV1 (0.994); SED5 (0.992); VAM3 (0.99); BET1 (0.988); SEC18 (0.986); VPS45 (0.981); BOS1 (0.98); TLG1 (0.979); GOS1 (0.979); SRO7 (0.979)
Homologues (species, bitscore): STX1A (Homo sapiens, 98.2); Stx1a (Mus musculus, 97.4); stx2b (Danio rerio, 94.0); stx1a (Xenopus tropicalis, 91.7); Syx1A (Drosophila melanogaster, 88.2); unc-64 (Caenorhabditis elegans, 95.5); SYP131 (Arabidopsis thaliana, 86.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:85025-85897:+ | gene-YPL232W_AKU4011 | rna-NM_001184046.1_AKU4011 | cds-NP_015092.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:290966-291838:+ | gene-YPL232W_BG1 | rna-NM_001184046.1_BG1 | cds-NP_015092.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:110235-111107:+ | gene-YPL232W_Bruggeman | rna-NM_001184046.1_Bruggeman | cds-NP_015092.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:107272-108144:+ | gene-YPL232W_CAT1 | rna-NM_001184046.1_CAT1 | cds-NP_015092.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:89338-90210:+ | gene-YPL232W_CBS1585 | rna-NM_001184046.1_CBS1585 | cds-NP_015092.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:103757-104629:+ | gene-YPL232W_CBS436 | rna-NM_001184046.1_CBS436 | cds-NP_015092.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:94503-95375:+ | gene-YPL232W_CBS6412 | rna-NM_001184046.1_CBS6412 | cds-NP_015092.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:85488-86360:+ | gene-YPL232W_CBS6413 | rna-NM_001184046.1_CBS6413 | cds-NP_015092.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:107203-108075:+ | gene-YPL232W_CENPK1137D | rna-NM_001184046.1_CENPK1137D | cds-NP_015092.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:84424-85296:+ | gene-YPL232W_EthanolRed | rna-NM_001184046.1_EthanolRed | cds-NP_015092.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:91231-92103:+ | gene-YPL232W_FaliES1 | rna-NM_001184046.1_FaliES1 | cds-NP_015092.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000293.1:18422-19294:- | gene-YPL232W_JAY291 | rna-NM_001184046.1_JAY291 | cds-NP_015092.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:102073-102945:+ | gene-YPL232W_MUCL30387 | rna-NM_001184046.1_MUCL30387 | cds-NP_015092.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:100511-101383:+ | gene-YPL232W_MUCL30388 | rna-NM_001184046.1_MUCL30388 | cds-NP_015092.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:82468-83340:+ | gene-YPL232W_MUCL39482 | rna-NM_001184046.1_MUCL39482 | cds-NP_015092.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:101340-102212:+ | gene-YPL232W_MUCL42920 | rna-NM_001184046.1_MUCL42920 | cds-NP_015092.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:107258-108130:+ | gene-YPL232W_NCIM3186 | rna-NM_001184046.1_NCIM3186 | cds-NP_015092.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:88914-89786:+ | gene-YPL232W_NCYC1407 | rna-NM_001184046.1_NCYC1407 | cds-NP_015092.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:96646-97518:+ | gene-YPL232W_PE2H3 | rna-NM_001184046.1_PE2H3 | cds-NP_015092.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:96289-97161:+ | gene-YPL232W_PE2H4 | rna-NM_001184046.1_PE2H4 | cds-NP_015092.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:107275-108147:+ | gene-YPL232W_S288C | rna-NM_001184046.1_S288C | cds-NP_015092.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000056.1:49154-50026:+ | gene-YPL232W_SA1 | rna-NM_001184046.1_SA1 | cds-NP_015092.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:91232-92104:+ | gene-YPL232W_ThermosaccDry | rna-NM_001184046.1_ThermosaccDry | cds-NP_015092.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:331111-331983:+ | gene-YPL232W_VR1 | rna-NM_001184046.1_VR1 | cds-NP_015092.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:90774-91646:+ | gene-YPL232W_ZTW1 | rna-NM_001184046.1_ZTW1 | cds-NP_015092.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:92272-93144:+ | gene-YPL232W_Sparadoxus | rna-NM_001184046.1_Sparadoxus | cds-NP_015092.1_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |