Gene name: SSN3
Reference locus (S288C): YPL042C
Gene biotype: protein_coding
Description: Meiotic mRNA stability protein kinase SSN3; Cyclin-dependent protein kinase; component of RNA polymerase II holoenzyme; involved in phosphorylation of the RNA polymerase II C-terminal domain; involved in glucose repression; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily
Top 10 interactors (score): SSN2 (0.999); RGR1 (0.999); SSN8 (0.999); SRB8 (0.999); MED7 (0.999); RPO21 (0.999); MED6 (0.998); SRB7 (0.997); SOH1 (0.996); NUT2 (0.996); MED2 (0.993); DST1 (0.984); SIN4 (0.978); NUT1 (0.975); CTK2 (0.975); CCL1 (0.968); CDC73 (0.968); GAL11 (0.967); CAK1 (0.967); KIN28 (0.967)
Homologues (species, bitscore): CDK8 (Homo sapiens, 258.8); Cdk8 (Mus musculus, 263.1); cdk8 (Danio rerio, 258.8); cdk8 (Xenopus tropicalis, 200.3); Cdk8 (Drosophila melanogaster, 260.8); cdk-8 (Caenorhabditis elegans, 222.2); CDKE;1 (Arabidopsis thaliana, 251.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:444540-446207:- | gene-YPL042C_AKU4011 | rna-NM_001183856.1_AKU4011 | cds-NP_015283.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:451235-452902:+ | gene-YPL042C_BG1 | rna-NM_001183856.1_BG1 | cds-NP_015283.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:521482-523149:- | gene-YPL042C_Bruggeman | rna-NM_001183856.1_Bruggeman | cds-NP_015283.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:561169-562836:- | gene-YPL042C_CAT1 | rna-NM_001183856.1_CAT1 | cds-NP_015283.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:448608-450275:- | gene-YPL042C_CBS1585 | rna-NM_001183856.1_CBS1585 | cds-NP_015283.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:462727-464394:- | gene-YPL042C_CBS436 | rna-NM_001183856.1_CBS436 | cds-NP_015283.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:452798-454466:- | gene-YPL042C_CBS6412 | rna-NM_001183856.1_CBS6412 | cds-NP_015283.1_CBS6412 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:445159-446826:- | gene-YPL042C_CBS6413 | rna-NM_001183856.1_CBS6413 | cds-NP_015283.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:473017-474684:- | gene-YPL042C_CENPK1137D | rna-NM_001183856.1_CENPK1137D | cds-NP_015283.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:442896-444563:- | gene-YPL042C_EthanolRed | rna-NM_001183856.1_EthanolRed | cds-NP_015283.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:450726-452393:- | gene-YPL042C_FaliES1 | rna-NM_001183856.1_FaliES1 | cds-NP_015283.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:59317-60984:- | gene-YPL042C_JAY291 | rna-NM_001183856.1_JAY291 | cds-NP_015283.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:462416-464083:- | gene-YPL042C_MUCL30387 | rna-NM_001183856.1_MUCL30387 | cds-NP_015283.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:461557-463224:- | gene-YPL042C_MUCL30388 | rna-NM_001183856.1_MUCL30388 | cds-NP_015283.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:441924-443591:- | gene-YPL042C_MUCL39482 | rna-NM_001183856.1_MUCL39482 | cds-NP_015283.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:500520-502187:- | gene-YPL042C_MUCL42920 | rna-NM_001183856.1_MUCL42920 | cds-NP_015283.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:473023-474690:- | gene-YPL042C_NCIM3186 | rna-NM_001183856.1_NCIM3186 | cds-NP_015283.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:449204-450871:- | gene-YPL042C_NCYC1407 | rna-NM_001183856.1_NCYC1407 | cds-NP_015283.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:455811-457478:- | gene-YPL042C_PE2H3 | rna-NM_001183856.1_PE2H3 | cds-NP_015283.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:455426-457093:- | gene-YPL042C_PE2H4 | rna-NM_001183856.1_PE2H4 | cds-NP_015283.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:473040-474707:- | gene-YPL042C_S288C | rna-NM_001183856.1_S288C | cds-NP_015283.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000077.1:10871-12538:- | gene-YPL042C_SA1 | rna-NM_001183856.1_SA1 | cds-NP_015283.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:450525-452192:- | gene-YPL042C_ThermosaccDry | rna-NM_001183856.1_ThermosaccDry | cds-NP_015283.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:465414-467081:- | gene-YPL042C_VR1 | rna-NM_001183856.1_VR1 | cds-NP_015283.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:449828-451495:- | gene-YPL042C_ZTW1 | rna-NM_001183856.1_ZTW1 | cds-NP_015283.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:449794-451473:- | gene-YPL042C_Sparadoxus | rna-NM_001183856.1_Sparadoxus | cds-NP_015283.1_Sparadoxus | 90.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |