Gene name: SSN2
Reference locus (S288C): YDR443C
Gene biotype: protein_coding
Description: Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; required for stable association of Srb10p-Srb11p kinase; essential for transcriptional regulation
Top 10 interactors (score): RGR1 (0.999); SSN8 (0.999); MED6 (0.999); SSN3 (0.999); SRB8 (0.999); MED7 (0.998); SRB7 (0.992); NUT2 (0.99); SOH1 (0.988); NUT1 (0.987); MED2 (0.986); SIN4 (0.985); TRA1 (0.969); ROX3 (0.964); UFD4 (0.944); DST1 (0.941); SRB5 (0.906); SET1 (0.904); GAL11 (0.879); SRB4 (0.867)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1285925-1290181:- | gene-YDR443C_AKU4011 | rna-NM_001180751.3_AKU4011 | cds-NP_010731.3_AKU4011 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:164281-168537:- | gene-YDR443C_BG1 | rna-NM_001180751.3_BG1 | cds-NP_010731.3_BG1 | 99.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1316557-1320813:- | gene-YDR443C_Bruggeman | rna-NM_001180751.3_Bruggeman | cds-NP_010731.3_Bruggeman | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1294518-1298774:- | gene-YDR443C_CAT1 | rna-NM_001180751.3_CAT1 | cds-NP_010731.3_CAT1 | 99.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1280232-1284488:- | gene-YDR443C_CBS1585 | rna-NM_001180751.3_CBS1585 | cds-NP_010731.3_CBS1585 | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1299599-1303855:- | gene-YDR443C_CBS436 | rna-NM_001180751.3_CBS436 | cds-NP_010731.3_CBS436 | 99.7 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1275870-1280126:- | gene-YDR443C_CBS6412 | rna-NM_001180751.3_CBS6412 | cds-NP_010731.3_CBS6412 | 99.2 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1298384-1302640:- | gene-YDR443C_CBS6413 | rna-NM_001180751.3_CBS6413 | cds-NP_010731.3_CBS6413 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1344352-1348614:- | gene-YDR443C_CENPK1137D | rna-NM_001180751.3_CENPK1137D | cds-NP_010731.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1289295-1293551:- | gene-YDR443C_EthanolRed | rna-NM_001180751.3_EthanolRed | cds-NP_010731.3_EthanolRed | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1292846-1297102:- | gene-YDR443C_FaliES1 | rna-NM_001180751.3_FaliES1 | cds-NP_010731.3_FaliES1 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000263.1:37085-41347:- | gene-YDR443C_JAY291 | rna-NM_001180751.3_JAY291 | cds-NP_010731.3_JAY291 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1299857-1304113:- | gene-YDR443C_MUCL30387 | rna-NM_001180751.3_MUCL30387 | cds-NP_010731.3_MUCL30387 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1281883-1286139:- | gene-YDR443C_MUCL30388 | rna-NM_001180751.3_MUCL30388 | cds-NP_010731.3_MUCL30388 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1271723-1275979:- | gene-YDR443C_MUCL39482 | rna-NM_001180751.3_MUCL39482 | cds-NP_010731.3_MUCL39482 | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1214159-1218415:- | gene-YDR443C_MUCL42920 | rna-NM_001180751.3_MUCL42920 | cds-NP_010731.3_MUCL42920 | 99.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1345599-1349861:- | gene-YDR443C_NCIM3186 | rna-NM_001180751.3_NCIM3186 | cds-NP_010731.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1285488-1289744:- | gene-YDR443C_NCYC1407 | rna-NM_001180751.3_NCYC1407 | cds-NP_010731.3_NCYC1407 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1296328-1300590:- | gene-YDR443C_PE2H3 | rna-NM_001180751.3_PE2H3 | cds-NP_010731.3_PE2H3 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1301896-1306152:- | gene-YDR443C_PE2H4 | rna-NM_001180751.3_PE2H4 | cds-NP_010731.3_PE2H4 | 99.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1345676-1349938:- | gene-YDR443C_S288C | rna-NM_001180751.3_S288C | cds-NP_010731.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000082.1:7285-11544:+ | gene-YDR443C_SA1 | rna-NM_001180751.3_SA1 | cds-NP_010731.3_SA1 | 99.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1297070-1301326:- | gene-YDR443C_ThermosaccDry | rna-NM_001180751.3_ThermosaccDry | cds-NP_010731.3_ThermosaccDry | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1312309-1316565:- | gene-YDR443C_VR1 | rna-NM_001180751.3_VR1 | cds-NP_010731.3_VR1 | 99.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:339726-343982:- | gene-YDR443C_ZTW1 | rna-NM_001180751.3_ZTW1 | cds-NP_010731.3_ZTW1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1293660-1297919:- | gene-YDR443C_Sparadoxus | rna-NM_001180751.3_Sparadoxus | cds-NP_010731.3_Sparadoxus | 90.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |