Gene name: SSL1
Reference locus (S288C): YLR005W
Gene biotype: protein_coding
Description: Suppressor of stem-loop protein 1; Subunit of the core form of RNA polymerase transcription factor TFIIH; has both protein kinase and DNA-dependent ATPase/helicase activities; essential for transcription and nucleotide excision repair; interacts with Tfb4p; Belongs to the GTF2H2 family
Top 10 interactors (score): SSL2 (0.999); KIN28 (0.999); TFA1 (0.999); TFB3 (0.999); CCL1 (0.999); TFB1 (0.999); TFB4 (0.999); RAD3 (0.999); TFB5 (0.999); TFB2 (0.999); TFA2 (0.999); RAD2 (0.993); RAD14 (0.984); TFG1 (0.974); RAD4 (0.972); TFB6 (0.968); TOA2 (0.967); RAD7 (0.959); RAD10 (0.957); RAD23 (0.95)
Homologues (species, bitscore): GTF2H2C (Homo sapiens, 295.4); Gtf2h2 (Mus musculus, 293.9); gtf2h2 (Danio rerio, 292.0); gtf2h2 (Xenopus tropicalis, 248.1); Ssl1 (Drosophila melanogaster, 272.7); T16H12.4 (Caenorhabditis elegans, 241.9); GTF2H2 (Arabidopsis thaliana, 300.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:148028-149413:+ | gene-YLR005W_AKU4011 | rna-NM_001181892.1_AKU4011 | cds-NP_013105.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:111238-112623:+ | gene-YLR005W_BG1 | rna-NM_001181892.1_BG1 | cds-NP_013105.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:158400-159785:+ | gene-YLR005W_Bruggeman | rna-NM_001181892.1_Bruggeman | cds-NP_013105.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:158719-160104:+ | gene-YLR005W_CAT1 | rna-NM_001181892.1_CAT1 | cds-NP_013105.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:155627-157012:+ | gene-YLR005W_CBS1585 | rna-NM_001181892.1_CBS1585 | cds-NP_013105.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:146252-147637:+ | gene-YLR005W_CBS436 | rna-NM_001181892.1_CBS436 | cds-NP_013105.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:154399-155784:+ | gene-YLR005W_CBS6412 | rna-NM_001181892.1_CBS6412 | cds-NP_013105.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:155893-157278:+ | gene-YLR005W_CBS6413 | rna-NM_001181892.1_CBS6413 | cds-NP_013105.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:145312-146697:+ | gene-YLR005W_CENPK1137D | rna-NM_001181892.1_CENPK1137D | cds-NP_013105.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:148049-149434:+ | gene-YLR005W_EthanolRed | rna-NM_001181892.1_EthanolRed | cds-NP_013105.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:147620-149005:+ | gene-YLR005W_FaliES1 | rna-NM_001181892.1_FaliES1 | cds-NP_013105.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000083.1:6590-7975:- | gene-YLR005W_JAY291 | rna-NM_001181892.1_JAY291 | cds-NP_013105.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:155756-157141:+ | gene-YLR005W_MUCL30387 | rna-NM_001181892.1_MUCL30387 | cds-NP_013105.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:161453-162838:+ | gene-YLR005W_MUCL30388 | rna-NM_001181892.1_MUCL30388 | cds-NP_013105.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:156098-157483:+ | gene-YLR005W_MUCL39482 | rna-NM_001181892.1_MUCL39482 | cds-NP_013105.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:156026-157411:+ | gene-YLR005W_MUCL42920 | rna-NM_001181892.1_MUCL42920 | cds-NP_013105.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:160023-161408:+ | gene-YLR005W_NCIM3186 | rna-NM_001181892.1_NCIM3186 | cds-NP_013105.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:147701-149086:+ | gene-YLR005W_NCYC1407 | rna-NM_001181892.1_NCYC1407 | cds-NP_013105.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:154049-155434:+ | gene-YLR005W_PE2H3 | rna-NM_001181892.1_PE2H3 | cds-NP_013105.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:153790-155175:+ | gene-YLR005W_PE2H4 | rna-NM_001181892.1_PE2H4 | cds-NP_013105.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:160049-161434:+ | gene-YLR005W_S288C | rna-NM_001181892.1_S288C | cds-NP_013105.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000062.1:63247-64632:+ | gene-YLR005W_SA1 | rna-NM_001181892.1_SA1 | cds-NP_013105.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:148123-149508:+ | gene-YLR005W_ThermosaccDry | rna-NM_001181892.1_ThermosaccDry | cds-NP_013105.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:161501-162886:+ | gene-YLR005W_VR1 | rna-NM_001181892.1_VR1 | cds-NP_013105.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:147457-148842:+ | gene-YLR005W_ZTW1 | rna-NM_001181892.1_ZTW1 | cds-NP_013105.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:156070-157449:+ | gene-YLR005W_Sparadoxus | rna-NM_001181892.1_Sparadoxus | cds-NP_013105.1_Sparadoxus | 92.3 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |