Gene name: SSK1
Reference locus (S288C): YLR006C
Gene biotype: protein_coding
Description: Osmolarity two-component system protein SSK1; Cytoplasmic phosphorelay intermediate osmosensor and regulator; part of a two-component signal transducer that mediates osmosensing via a phosphorelay mechanism; required for mitophagy; dephosphorylated form is degraded by the ubiquitin-proteasome system; potential Cdc28p substrate
Top 10 interactors (score): SSK2 (0.999); SSK22 (0.999); YPD1 (0.999); PBS2 (0.997); HOG1 (0.996); SHO1 (0.992); SKN7 (0.989); STE11 (0.989); STE50 (0.899); OPY2 (0.888); PTP3 (0.877); STE20 (0.869); PTP2 (0.868); CDC42 (0.86); SLN1 (0.819); HKR1 (0.813); MSB2 (0.811); SKO1 (0.805); PTC1 (0.787); STE7 (0.779)
Homologues (species, bitscore): HK5 (Arabidopsis thaliana, 65.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:149736-151874:- | gene-YLR006C_AKU4011 | rna-NM_001181893.1_AKU4011 | cds-NP_013106.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:112944-115082:- | gene-YLR006C_BG1 | rna-NM_001181893.1_BG1 | cds-NP_013106.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:160106-162244:- | gene-YLR006C_Bruggeman | rna-NM_001181893.1_Bruggeman | cds-NP_013106.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:160425-162563:- | gene-YLR006C_CAT1 | rna-NM_001181893.1_CAT1 | cds-NP_013106.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:157334-159472:- | gene-YLR006C_CBS1585 | rna-NM_001181893.1_CBS1585 | cds-NP_013106.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:147958-150096:- | gene-YLR006C_CBS436 | rna-NM_001181893.1_CBS436 | cds-NP_013106.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:156106-158243:- | gene-YLR006C_CBS6412 | rna-NM_001181893.1_CBS6412 | cds-NP_013106.1_CBS6412 | 99.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:157601-159739:- | gene-YLR006C_CBS6413 | rna-NM_001181893.1_CBS6413 | cds-NP_013106.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:147017-149155:- | gene-YLR006C_CENPK1137D | rna-NM_001181893.1_CENPK1137D | cds-NP_013106.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:149756-151894:- | gene-YLR006C_EthanolRed | rna-NM_001181893.1_EthanolRed | cds-NP_013106.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:149327-151465:- | gene-YLR006C_FaliES1 | rna-NM_001181893.1_FaliES1 | cds-NP_013106.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000083.1:4130-6268:+ | gene-YLR006C_JAY291 | rna-NM_001181893.1_JAY291 | cds-NP_013106.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:157462-159600:- | gene-YLR006C_MUCL30387 | rna-NM_001181893.1_MUCL30387 | cds-NP_013106.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:163159-165297:- | gene-YLR006C_MUCL30388 | rna-NM_001181893.1_MUCL30388 | cds-NP_013106.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:157806-159944:- | gene-YLR006C_MUCL39482 | rna-NM_001181893.1_MUCL39482 | cds-NP_013106.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:157731-159869:- | gene-YLR006C_MUCL42920 | rna-NM_001181893.1_MUCL42920 | cds-NP_013106.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:161729-163867:- | gene-YLR006C_NCIM3186 | rna-NM_001181893.1_NCIM3186 | cds-NP_013106.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:149409-151547:- | gene-YLR006C_NCYC1407 | rna-NM_001181893.1_NCYC1407 | cds-NP_013106.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:155754-157892:- | gene-YLR006C_PE2H3 | rna-NM_001181893.1_PE2H3 | cds-NP_013106.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:155495-157633:- | gene-YLR006C_PE2H4 | rna-NM_001181893.1_PE2H4 | cds-NP_013106.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:161755-163893:- | gene-YLR006C_S288C | rna-NM_001181893.1_S288C | cds-NP_013106.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000062.1:64953-67091:- | gene-YLR006C_SA1 | rna-NM_001181893.1_SA1 | cds-NP_013106.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:149830-151968:- | gene-YLR006C_ThermosaccDry | rna-NM_001181893.1_ThermosaccDry | cds-NP_013106.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:163207-165345:- | gene-YLR006C_VR1 | rna-NM_001181893.1_VR1 | cds-NP_013106.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:149164-151303:- | gene-YLR006C_ZTW1 | rna-NM_001181893.1_ZTW1 | cds-NP_013106.1_ZTW1 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:157762-159900:- | gene-YLR006C_Sparadoxus | rna-NM_001181893.1_Sparadoxus | cds-NP_013106.1_Sparadoxus | 89.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |